RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 SSX6Q7RTT6 188 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 POGLUT1Q8NBL1 392 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 S100A16Q96FQ6 103 aaKnown RBP16.48■□□□□ 0.23
PTPRF-209ENST00000438120 ZNF700Q9H0M5 742 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 ENAMQ9NRM1 1142 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 DZANK1Q9NVP4 752 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 APOBEC3BQ9UH17 382 aaKnown RBP16.48■□□□□ 0.23
PTPRF-209ENST00000438120 CELP19835 753 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 ENTPD1P49961 510 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 MPP2Q14168 576 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 LIPKQ5VXJ0 399 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 GTF2IRD2BQ6EKJ0 949 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 SHQ1Q6PI26 577 aaKnown RBP16.48■□□□□ 0.23
PTPRF-209ENST00000438120 GTF2IRD2Q86UP8 949 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 TMEM25Q86YD3 366 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 BBS10Q8TAM1 723 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 KIAA1143Q96AT1 154 aaPredicted RBP16.48■□□□□ 0.23
PTPRF-209ENST00000438120 FKBP14Q9NWM8 211 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 ZFR2Q9UPR6 939 aaKnown RBP16.48■□□□□ 0.23
PTPRF-209ENST00000438120 C14orf166Q9Y224 244 aaKnown RBP16.48■□□□□ 0.23
PTPRF-209ENST00000438120 A0A1W2PPW3 197 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 BHMG1C9JSJ3 638 aaPredicted RBP16.48■□□□□ 0.23
PTPRF-209ENST00000438120 SRCP12931 536 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 NR2C1P13056 603 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 ST3GAL4Q11206 333 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 ZSCAN4Q8NAM6 433 aaPredicted RBP16.48■□□□□ 0.23
PTPRF-209ENST00000438120 OR8K5Q8NH50 307 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 SMARCD2Q92925 531 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 MTG2Q9H4K7 406 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 KCPQ6ZWJ8 1503 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 RBM34P42696 430 aaKnown RBP16.48■□□□□ 0.23
PTPRF-209ENST00000438120 SLC36A3Q495N2 470 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 CES4AQ5XG92 561 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 ZNF517Q6ZMY9 492 aaPredicted RBP16.48■□□□□ 0.23
PTPRF-209ENST00000438120 ZNF717Q9BY31 904 aaPredicted RBP16.48■□□□□ 0.23
PTPRF-209ENST00000438120 NKX2-4Q9H2Z4 354 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 NPIPA2E9PIF3 369 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 NPIPA3F8WFD2 350 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 AURKAO14965 403 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 PLATP00750 562 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 WNT7BP56706 349 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 ARF3P61204 181 aaPredicted RBP16.47■□□□□ 0.23
PTPRF-209ENST00000438120 ARF1P84077 181 aaKnown RBP16.47■□□□□ 0.23
PTPRF-209ENST00000438120 NFE2L1Q14494 772 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 ATXN7L3Q14CW9 347 aaPredicted RBP16.47■□□□□ 0.23
PTPRF-209ENST00000438120 IL22RA1Q8N6P7 574 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 CSNK1A1LQ8N752 337 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 DEFB126Q9BYW3 111 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 KAT6AQ92794 2004 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 ANKRD26Q9UPS8 1709 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 NPPAP01160 153 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 MPC1LP0DKB6 136 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 KCNC4Q03721 635 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 ZFAND4Q86XD8 727 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 BORCS8Q96FH0 119 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 PDE7BQ9NP56 450 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 NUDT15Q9NV35 164 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 PRODH2Q9UF12 536 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 SH2B3Q9UQQ2 575 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 TMEM5Q9Y2B1 443 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 PCDHGA2Q9Y5H1 932 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 A0A096LPI6 279 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 A8MV72 311 aaPredicted RBP16.47■□□□□ 0.23
PTPRF-209ENST00000438120 ATP4BP51164 291 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 PHC1P78364 1004 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 SEC23BQ15437 767 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 LHFPL3Q86UP9 236 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 VRTNQ9H8Y1 702 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 ZBTB20Q9HC78 741 aaPredicted RBP16.47■□□□□ 0.23
PTPRF-209ENST00000438120 ABCB7O75027 752 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 KCNAB2Q13303 367 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 ALG10Q5BKT4 473 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 ARSJQ5FYB0 599 aaPredicted RBP16.47■□□□□ 0.23
PTPRF-209ENST00000438120 C1orf220Q5T0J3 134 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 ZNF550Q7Z398 422 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 ZC3H3Q8IXZ2 948 aaKnown RBP16.47■□□□□ 0.23
PTPRF-209ENST00000438120 THAP6Q8TBB0 222 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 RAB7BQ96AH8 199 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 IFT52Q9Y366 437 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 PCDHGB2Q9Y5G2 931 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 FMN2Q9NZ56 1722 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 VSTM5A8MXK1 200 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 SLC33A1O00400 549 aaPredicted RBP16.47■□□□□ 0.23
PTPRF-209ENST00000438120 NARSO43776 548 aaKnown RBP16.47■□□□□ 0.23
PTPRF-209ENST00000438120 HOXA11P31270 313 aaPredicted RBP16.47■□□□□ 0.23
PTPRF-209ENST00000438120 ZXDBP98169 803 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 ELAVL3Q14576 367 aaKnown RBP16.47■□□□□ 0.23
PTPRF-209ENST00000438120 ZNF404Q494X3 552 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 CHST14Q8NCH0 376 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 HUS1BQ8NHY5 278 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 SLC30A2Q9BRI3 323 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 AIFM2Q9BRQ8 373 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 TAS2R10Q9NYW0 307 aa16.47■□□□□ 0.23
PTPRF-209ENST00000438120 OR2B3O76000 313 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 ZNF865P0CJ78 1059 aaPredicted RBP16.46■□□□□ 0.23
PTPRF-209ENST00000438120 LRRC20Q8TCA0 184 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 ZNF675Q8TD23 568 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 SYNGR4O95473 234 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 BPIP17213 487 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 S100A1P23297 94 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms