RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 HPCAL1P37235 193 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 OPRL1P41146 370 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 C21orf59P57076 290 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 SMAD4Q13485 552 aaKnown RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 TP53BP2Q13625 1128 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 CTF1Q16619 201 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 EXOC3L2Q2M3D2 409 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 PAGE2BQ5JRK9 111 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 NEK10Q6ZWH5 1172 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 MTSS1LQ765P7 747 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 BCDIN3DQ7Z5W3 292 aaKnown RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 RASGRP3Q8IV61 690 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 CCDC103Q8IW40 242 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 ENTHD1Q8IYW4 607 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 CLIP4Q8N3C7 705 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 IL17RCQ8NAC3 791 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 OR5D16Q8NGK9 328 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 HCAR2Q8TDS4 363 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 COQ8BQ96D53 544 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 NRBF2Q96F24 287 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 FCRL4Q96PJ5 515 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 DOHHQ9BU89 302 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 TRIT1Q9H3H1 467 aaKnown RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 MAGIXQ9H6Y5 334 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 CXorf36Q9H7Y0 433 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 C8orf4Q9NR00 106 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 ADPRHL2Q9NX46 363 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 TAAR2Q9P1P5 351 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 NFKBIL1Q9UBC1 381 aaPredicted RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 CA14Q9ULX7 337 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 MUC22E2RYF6 1773 aaPredicted RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 FUOMA2VDF0 154 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 ZNF99A8MXY4 864 aaPredicted RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 MAGP20916 626 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 TMED10P49755 219 aaKnown RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 MANFP55145 182 aaKnown RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 PPP2CBP62714 309 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 PPP2CAP67775 309 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 CDK6Q00534 326 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 HIST2H2ACQ16777 129 aaPredicted RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 TMEM52BQ4KMG9 183 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 SPIN4Q56A73 249 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 PRAMEF14Q5SWL7 426 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 PRAMEF13Q5VWM6 474 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 HIST2H2AA3Q6FI13 130 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 THOC7Q6I9Y2 204 aaKnown RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 RNF165Q6ZSG1 346 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 WDR53Q7Z5U6 358 aaPredicted RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.02□□□□□ -0.974e-7■■■□□ 15
CUX1-206ENST00000437600 LRRC56Q8IYG6 542 aaPredicted RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 ABCA7Q8IZY2 2146 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.02□□□□□ -0.976e-6■■■■■ 38.3
CUX1-206ENST00000437600 PLEKHA8Q96JA3 519 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 DOK1Q99704 481 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 PHF7Q9BWX1 381 aaPredicted RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 HDAC8Q9BY41 377 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 RSPH9Q9H1X1 276 aaPredicted RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 WDR26Q9H7D7 661 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 C1GALT1Q9NS00 363 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 TRNAU1APQ9NX07 287 aaKnown RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 TEX10Q9NXF1 929 aaPredicted RBP9.02□□□□□ -0.97
CUX1-206ENST00000437600 GPR83Q9NYM4 423 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 TSC22D4Q9Y3Q8 395 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 PCDHGA6Q9Y5G7 932 aa9.02□□□□□ -0.97
CUX1-206ENST00000437600 QSOX1O00391 747 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 UGDHO60701 494 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 SOX14O95416 240 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 BCHEP06276 602 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 CHRM5P08912 532 aaPredicted RBP9.01□□□□□ -0.97
CUX1-206ENST00000437600 VASPP50552 380 aaPredicted RBP9.01□□□□□ -0.97
CUX1-206ENST00000437600 DPTQ07507 201 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 ZNF658BQ4V348 819 aaPredicted RBP9.01□□□□□ -0.97
CUX1-206ENST00000437600 CEACAM20Q6UY09 585 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 Q6ZS52 159 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 FAM9CQ8IZT9 166 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 CHCHD4Q8N4Q1 142 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 ABHD11Q8NFV4 315 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 APH1BQ8WW43 257 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 IL4I1Q96RQ9 567 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 PHOX2BQ99453 314 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 YTHDF1Q9BYJ9 559 aaKnown RBP9.01□□□□□ -0.97
CUX1-206ENST00000437600 CHST8Q9H2A9 424 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 OR52A5Q9H2C5 316 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 BRF2Q9HAW0 419 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 C2orf42Q9NWW7 574 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 TAS2R9Q9NYW1 312 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 LYVE1Q9Y5Y7 322 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 ARHGEF17Q96PE2 2063 aaPredicted RBP9.01□□□□□ -0.97
CUX1-206ENST00000437600 POM121BA6NF01 834 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 B4GALT2O60909 372 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 NTN1O95631 604 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 GSTT2P0CG29 244 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 GSTT2BP0CG30 244 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 ASMTP46597 345 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 SNRPNP63162 240 aaKnown RBP9.01□□□□□ -0.97
CUX1-206ENST00000437600 SLC35A2P78381 396 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 SGCGQ13326 291 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 CLCA4Q14CN2 919 aa9.01□□□□□ -0.97
CUX1-206ENST00000437600 MAD2L1BPQ15013 274 aaPredicted RBP9.01□□□□□ -0.97
CUX1-206ENST00000437600 KIAA1614Q5VZ46 1190 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms