RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 RFTN2Q52LD8 501 aaPredicted RBP11.66□□□□□ -0.54
USP40-205ENST00000430158 SPIN4Q56A73 249 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 CCNYL2Q5T2Q4 361 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 ATG16L1Q676U5 607 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 PAGE2Q7Z2X7 111 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 MAVSQ7Z434 540 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 ANKRD37Q7Z713 158 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 RAB43Q86YS6 212 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 MMP21Q8N119 569 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 FAM76AQ8TAV0 307 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 THAP4Q8WY91 577 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 TTC9Q92623 222 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 C8orf44Q96CB5 159 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 IMMP1LQ96LU5 166 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 C7orf26Q96N11 449 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 IP6K3Q96PC2 410 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 ZNF700Q9H0M5 742 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 LRTM1Q9HBL6 345 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 SLCO1B3Q9NPD5 702 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 PRDM9Q9NQV7 894 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 INTS9Q9NV88 658 aaKnown RBP11.66□□□□□ -0.54
USP40-205ENST00000430158 WDR70Q9NW82 654 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 C1orf109Q9NX04 203 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 MS4A12Q9NXJ0 267 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 GIMAP2Q9UG22 337 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 EXO1Q9UQ84 846 aaKnown RBP11.66□□□□□ -0.54
USP40-205ENST00000430158 POLHQ9Y253 713 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 DLGAP4Q9Y2H0 992 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 KCNMB2Q9Y691 235 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 IGHV1-45A0A0A0MS14 117 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 BLACEA4D250 179 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 PGRMC2O15173 223 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 RGS14O43566 566 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 FGF17O60258 216 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 PRMT3O60678 531 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 CHEK2O96017 543 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 C8orf89P0DMQ9 161 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 NEFHP12036 1026 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 CPN2P22792 545 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 JAK1P23458 1154 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 TACR1P25103 407 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 ACSM2AQ08AH3 577 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 Q0VFX4 171 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 PRSS53Q2L4Q9 553 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 DEFB109BQ30KR1 87 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 LINC00303Q3SY05 128 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 MINDY4Q4G0A6 757 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 C6orf136Q5SQH8 315 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 ACSM2BQ68CK6 577 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 FAAH2Q6GMR7 532 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 NOXRED1Q6NXP6 359 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 PCSK4Q6UW60 755 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 RIPOR1Q6ZS17 1223 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 GPR155Q7Z3F1 870 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 CLNKQ7Z7G1 428 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 APLFQ8IW19 511 aaPredicted RBP11.65□□□□□ -0.54
USP40-205ENST00000430158 ZSCAN1Q8NBB4 408 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 DNAJB14Q8TBM8 379 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 C16orf78Q8WTQ4 265 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 PTCHD1Q96NR3 888 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 CCT7Q99832 543 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 MEAF6Q9HAF1 191 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 PRTFDC1Q9NRG1 225 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 HEY2Q9UBP5 337 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 PHF11Q9UIL8 331 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 FBXL4Q9UKA2 621 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 PCDHA9Q9Y5H5 950 aa11.65□□□□□ -0.54
USP40-205ENST00000430158 CFAP46Q8IYW2 2715 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 ATP6AP2A0A1C7CYW4 349 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 A0A1W2PS29 197 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 PSMD12O00232 456 aaPredicted RBP11.64□□□□□ -0.55
USP40-205ENST00000430158 SDHDO14521 159 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 PCDH7O60245 1069 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 SKAP2O75563 359 aaPredicted RBP11.64□□□□□ -0.55
USP40-205ENST00000430158 ATP6AP2O75787 350 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 CEACAM4O75871 244 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 ITGB2P05107 769 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 PPP2R1BP30154 601 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 SOX18P35713 384 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 GPR143P51810 404 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 MAPK12P53778 367 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 SOX8P57073 446 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 LAPTM4AQ15012 233 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 NSDHLQ15738 373 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 SPDYAQ5MJ70 313 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 DCAF10Q5QP82 559 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 NDUFAF5Q5TEU4 345 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 CPZQ66K79 652 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 FAM71E1Q6IPT2 247 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 CYP20A1Q6UW02 462 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 NDUFAF7Q7L592 441 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 CPEB2Q7Z5Q1 589 aaKnown RBP11.64□□□□□ -0.55
USP40-205ENST00000430158 WDR75Q8IWA0 830 aaKnown RBP11.64□□□□□ -0.55
USP40-205ENST00000430158 DDIASQ8IXT1 998 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 KIRREL3Q8IZU9 778 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 NFAM1Q8NET5 270 aaPredicted RBP11.64□□□□□ -0.55
USP40-205ENST00000430158 TANKQ92844 425 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 C19orf60Q96EN9 201 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 MAGEB18Q96M61 343 aa11.64□□□□□ -0.55
USP40-205ENST00000430158 CATSPER2Q96P56 530 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms