RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 LPAL2Q16609 132 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 SRSF7Q16629 238 aaKnown RBP eCLIP3.79□□□□□ -1.8
HMGB3-203ENST00000430118 SGSM1Q2NKQ1 1148 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 QRICH1Q2TAL8 776 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 HFEQ30201 348 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 MCMDC2Q4G0Z9 681 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 BOLA3Q53S33 107 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 XKR9Q5GH70 373 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 MTX3Q5HYI7 312 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 THOC7Q6I9Y2 204 aaKnown RBP3.79□□□□□ -1.8
HMGB3-203ENST00000430118 GPR141Q7Z602 305 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 LONP2Q86WA8 852 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 PLA2G4DQ86XP0 818 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 PTOV1Q86YD1 416 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 KLHDC8AQ8IYD2 350 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 GBGT1Q8N5D6 347 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 ARL6IP6Q8N6S5 226 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 BMPERQ8N8U9 685 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 PRR26Q8N8Z3 221 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 ZNF548Q8NEK5 533 aaPredicted RBP3.79□□□□□ -1.8
HMGB3-203ENST00000430118 URGCPQ8TCY9 931 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 SLC13A3Q8WWT9 602 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 ESR2Q92731 530 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 PROX1Q92786 737 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 SGF29Q96ES7 293 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 CFAP36Q96G28 342 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 C3orf30Q96M34 536 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 INPP4AQ96PE3 977 aaPredicted RBP3.79□□□□□ -1.8
HMGB3-203ENST00000430118 TSC22D3Q99576 134 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 SLC39A3Q9BRY0 314 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 CAPS2Q9BXY5 557 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 TM6SF1Q9BZW5 370 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 ABCG8Q9H221 673 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 Q9H8V8 135 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.79□□□□□ -1.8
HMGB3-203ENST00000430118 ECHDC1Q9NTX5 307 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 B3GAT1Q9P2W7 334 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 ATXN10Q9UBB4 475 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 RABL2AQ9UBK7 228 aaPredicted RBP3.79□□□□□ -1.8
HMGB3-203ENST00000430118 TRIM10Q9UDY6 481 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 PCSK1NQ9UHG2 260 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 NEUROG3Q9Y4Z2 214 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 GPR179Q6PRD1 2367 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 MYO7AQ13402 2215 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 IGLV5-37A0A075B6J1 123 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 A0A0G2JNG1 304 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 A0A1B0GVT2 93 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 KRT87PA6NCN2 255 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 ANHXE9PGG2 379 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 CACNB4O00305 520 aaPredicted RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 ZBTB5O15062 677 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 ZSCAN12O43309 604 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 VEGFDO43915 354 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 NMT2O60551 498 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 CLDN14O95500 239 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 MOCS2O96007 188 aaPredicted RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 ZNF806P0C7X5 589 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 CCDC192P0DO97 292 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 KRT3P12035 628 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 CEACAM1P13688 526 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 MX1P20591 662 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 AZGP1P25311 298 aaKnown RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 PSMB4P28070 264 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 TMOD1P28289 359 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 SSTR2P30874 369 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 CCKBRP32239 447 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 S100A5P33763 92 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 GNL1P36915 607 aaPredicted RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 GLIPR1P48060 266 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 CXCL12P48061 93 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 ACADVLP49748 655 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 PDX1P52945 283 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 CRYBB1P53674 252 aaPredicted RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 ADARP55265 1226 aaKnown RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 YBEYP58557 167 aaPredicted RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 TUBA1BP68363 451 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 CX3CL1P78423 397 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 PPIDQ08752 370 aaKnown RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 RIPK1Q13546 671 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 KIR2DS5Q14953 304 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 KARSQ15046 597 aaKnown RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 BCL2A1Q16548 175 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 ODF3L2Q3SX64 289 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 LACTB2Q53H82 288 aaPredicted RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 LBHQ53QV2 105 aaPredicted RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 STPG1Q5TH74 334 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 LIN9Q5TKA1 542 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 ZNF626Q68DY1 528 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 NEK5Q6P3R8 708 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 CYB5D1Q6P9G0 228 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 COLCA1Q6ZS62 124 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 NCCRP1Q6ZVX7 275 aaPredicted RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 TUBA1AQ71U36 451 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 BZW1Q7L1Q6 419 aaKnown RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 PRSS42Q7Z5A4 293 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 PIGWQ7Z7B1 504 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 MEX3DQ86XN8 651 aaKnown RBP3.78□□□□□ -1.8
HMGB3-203ENST00000430118 CCDC83Q8IWF9 413 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 ARHGAP24Q8N264 748 aa3.78□□□□□ -1.8
HMGB3-203ENST00000430118 THAP8Q8NA92 274 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms