RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 WDR20Q8TBZ3 569 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 ZBTB26Q9HCK0 441 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 KIF1AQ12756 1690 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 BEST1O76090 585 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 HRGP04196 525 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 AIMP2Q13155 320 aaKnown RBP14.79□□□□□ -0.04
PTPRF-206ENST00000429895 NADK2Q4G0N4 442 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 OR4N5Q8IXE1 308 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 EHD1Q9H4M9 534 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 HCN4Q9Y3Q4 1203 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 BRINP1O60477 761 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 CKMT1AP12532 417 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 TAS2R43P59537 309 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 ELP5Q8TE02 316 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 ZNF296Q8WUU4 475 aaPredicted RBP14.79□□□□□ -0.04
PTPRF-206ENST00000429895 GLYATL1Q969I3 302 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 NECAB3Q96P71 396 aaPredicted RBP14.79□□□□□ -0.04
PTPRF-206ENST00000429895 DHDHQ9UQ10 334 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 PPLO60437 1756 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 FLRT2O43155 660 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 CD40LGP29965 261 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 RAB28P51157 221 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 FBXO43Q4G163 708 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 GLT8D1Q68CQ7 371 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 CDCA2Q69YH5 1023 aaPredicted RBP14.79□□□□□ -0.04
PTPRF-206ENST00000429895 LRFN4Q6PJG9 635 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 ZNF517Q6ZMY9 492 aaPredicted RBP14.79□□□□□ -0.04
PTPRF-206ENST00000429895 CSNK1A1LQ8N752 337 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 MTMR10Q9NXD2 777 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 CLEC4EQ9ULY5 219 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 ARHGEF28Q8N1W1 1705 aaKnown RBP14.79□□□□□ -0.04
PTPRF-206ENST00000429895 ACRV1P26436 265 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 IST1P53990 364 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 BBS10Q8TAM1 723 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 ZNF431Q8TF32 576 aaPredicted RBP14.79□□□□□ -0.04
PTPRF-206ENST00000429895 REV1Q9UBZ9 1251 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 SCP2D1Q9UJQ7 156 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 ABCG2Q9UNQ0 655 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 MGAT4BQ9UQ53 548 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 RNF6Q9Y252 685 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 PCDHGA2Q9Y5H1 932 aa14.79□□□□□ -0.04
PTPRF-206ENST00000429895 RBMXP38159 391 aaKnown RBP14.78□□□□□ -0.04
PTPRF-206ENST00000429895 MAGEA8P43361 318 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 FNTBP49356 437 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 AFF1P51825 1210 aaKnown RBP14.78□□□□□ -0.04
PTPRF-206ENST00000429895 KIAA1614Q5VZ46 1190 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 GTF2IRD2BQ6EKJ0 949 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 GTF2IRD2Q86UP8 949 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 SMG8Q8ND04 991 aaKnown RBP14.78□□□□□ -0.04
PTPRF-206ENST00000429895 TBC1D15Q8TC07 691 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 AURKBQ96GD4 344 aaPredicted RBP14.78□□□□□ -0.04
PTPRF-206ENST00000429895 MOV10Q9HCE1 1003 aaKnown RBP14.78□□□□□ -0.04
PTPRF-206ENST00000429895 ACTR3BQ9P1U1 418 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 EXOSC1Q9Y3B2 195 aaKnown RBP14.78□□□□□ -0.04
PTPRF-206ENST00000429895 ANXA3P12429 323 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 GTF2F2P13984 249 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 KCNC1P48547 511 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 PCLAFQ15004 111 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 UPP1Q16831 310 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 SCGB1C1Q8TD33 95 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 FCAMRQ8WWV6 532 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 MOAP1Q96BY2 351 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 SNAI1O95863 264 aaPredicted RBP14.78□□□□□ -0.04
PTPRF-206ENST00000429895 C1GALT1C1LP0DN25 315 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 CD72P21854 359 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 F8A1P23610 371 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 LIX1LQ8IVB5 337 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 NSUN5Q96P11 429 aaKnown RBP14.78□□□□□ -0.04
PTPRF-206ENST00000429895 F2RL3Q96RI0 385 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 RPF2Q9H7B2 306 aaKnown RBP14.78□□□□□ -0.04
PTPRF-206ENST00000429895 MRC1P22897 1456 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 H3BSA7 217 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 FZD9O00144 591 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 CD97P48960 835 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 FIGNL1Q6PIW4 674 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 TRAM1L1Q8N609 369 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 NEDD4LQ96PU5 975 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 TMPRSS11EQ9UL52 423 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 TEX264Q9Y6I9 313 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 CDH10Q9Y6N8 788 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 LATO43561 262 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 RFPL2O75678 378 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 F2P00734 622 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 MAGEA11P43364 429 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 POU3F4P49335 361 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 RPL26P61254 145 aaKnown RBP14.78□□□□□ -0.04
PTPRF-206ENST00000429895 RPS15P62841 145 aaKnown RBP14.78□□□□□ -0.04
PTPRF-206ENST00000429895 RPS26P62854 115 aaKnown RBP14.78□□□□□ -0.04
PTPRF-206ENST00000429895 ATAD3CQ5T2N8 411 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 GPR62Q9BZJ7 368 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 MRM3Q9HC36 420 aaKnown RBP14.78□□□□□ -0.04
PTPRF-206ENST00000429895 RNF186Q9NXI6 227 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 OR1A2Q9Y585 309 aa14.78□□□□□ -0.04
PTPRF-206ENST00000429895 FAM72CH0Y354 149 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 H3BUI4 141 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 PRKCAP17252 672 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 DLX2Q07687 328 aaPredicted RBP14.77□□□□□ -0.04
PTPRF-206ENST00000429895 FAM72AQ5TYM5 149 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 FAM72DQ6L9T8 149 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 NIPAL1Q6NVV3 410 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms