RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 BBOF1Q8ND07 529 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 MORN4Q8NDC4 146 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 SRFBP1Q8NEF9 429 aaKnown RBP13.45□□□□□ -0.26
SDC1-204ENST00000429035 DGAT2Q96PD7 388 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 GPR22Q99680 433 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 CPNE1Q99829 537 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 FAM173AQ9BQD7 235 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 MS4A8Q9BY19 250 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 PHACTR1Q9C0D0 580 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 ALG9Q9H6U8 611 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 LYRM4Q9HD34 91 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 KCNJ16Q9NPI9 418 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 PLSCR2Q9NRY7 297 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 SACM1LQ9NTJ5 587 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 ZNF490Q9ULM2 529 aaPredicted RBP13.45□□□□□ -0.26
SDC1-204ENST00000429035 ARHGAP21Q5T5U3 1957 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 ADGRG4Q8IZF6 3080 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 ATP6AP2A0A1C7CYW4 349 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 FIGNL2A6NMB9 653 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 TP73O15350 636 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 ATP6AP2O75787 350 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 WISP3O95389 354 aaPredicted RBP13.44□□□□□ -0.26
SDC1-204ENST00000429035 TGFB1P01137 390 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 CCL3P10147 92 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 CAPN3P20807 821 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 ATP5A1P25705 553 aaKnown RBP13.44□□□□□ -0.26
SDC1-204ENST00000429035 MAGEA5P43359 124 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 RIPPLY3P57055 190 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 RAB10P61026 200 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 RNF4P78317 190 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 MYBPHQ13203 477 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 AP5B1Q2VPB7 878 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 MED27Q6P2C8 311 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 CMC1Q7Z7K0 106 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 CCDC25Q86WR0 208 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 OR4N5Q8IXE1 308 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 FAM109AQ8N4B1 249 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 TMEM251Q8N6I4 163 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 ACOT4Q8N9L9 421 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 OR5L2Q8NGL0 311 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 DOK4Q8TEW6 326 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 PTPMT1Q8WUK0 201 aaPredicted RBP13.44□□□□□ -0.26
SDC1-204ENST00000429035 KIAA1191Q96A73 305 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 GAL3ST4Q96RP7 486 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 ZNF559Q9BR84 538 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 CNPPD1Q9BV87 410 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 SORBS1Q9BX66 1292 aaKnown RBP13.44□□□□□ -0.26
SDC1-204ENST00000429035 PRDM7Q9NQW5 492 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 NPDC1Q9NQX5 325 aaPredicted RBP13.44□□□□□ -0.26
SDC1-204ENST00000429035 ALKBH4Q9NXW9 302 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 NUDT4Q9NZJ9 180 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 VTI1BQ9UEU0 232 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 NINQ8N4C6 2090 aa13.44□□□□□ -0.26
SDC1-204ENST00000429035 FREM3P0C091 2139 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 TCRBV9S1A1TA0A576 114 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 UBXN8O00124 270 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 BCKDKO14874 412 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 DYRK3O43781 588 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 FGF17O60258 216 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 ETHE1O95571 254 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 CNR1P21554 472 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 HIST1H1TP22492 207 aaPredicted RBP13.43□□□□□ -0.26
SDC1-204ENST00000429035 GGT5P36269 586 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 MAN2A2P49641 1150 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 C2orf54Q08AI8 447 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 ASPHQ12797 758 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 ILF2Q12905 390 aaKnown RBP13.43□□□□□ -0.26
SDC1-204ENST00000429035 EMC4Q5J8M3 183 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 NDUFAF5Q5TEU4 345 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 PRAMEF20Q5VT98 475 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 OPN5Q6U736 354 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 RGS9BPQ6ZS82 235 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 ACAD11Q709F0 780 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 UBE3DQ7Z6J8 389 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 TBC1D1Q86TI0 1168 aaPredicted RBP13.43□□□□□ -0.26
SDC1-204ENST00000429035 RNF175Q8N4F7 328 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 PPM1NQ8N819 430 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 GOLM1Q8NBJ4 401 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 SLC22A8Q8TCC7 542 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 ZNF473Q8WTR7 871 aaKnown RBP13.43□□□□□ -0.26
SDC1-204ENST00000429035 UBE2E3Q969T4 207 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 WDR34Q96EX3 536 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 MCMBPQ9BTE3 642 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 TBCDQ9BTW9 1192 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 CD244Q9BZW8 370 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 OR51B5Q9H339 312 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 ZDHHC11Q9H8X9 412 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 GRPEL1Q9HAV7 217 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 IL1RL2Q9HB29 575 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 TUBA8Q9NY65 449 aaPredicted RBP13.43□□□□□ -0.26
SDC1-204ENST00000429035 OPTCQ9UBM4 332 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 PTBP2Q9UKA9 531 aaKnown RBP13.43□□□□□ -0.26
SDC1-204ENST00000429035 ACAD8Q9UKU7 415 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 ANGPTL3Q9Y5C1 460 aa13.43□□□□□ -0.26
SDC1-204ENST00000429035 FOXO6A8MYZ6 492 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 ZNF354AO60765 605 aaPredicted RBP13.42□□□□□ -0.26
SDC1-204ENST00000429035 PRKRAO75569 313 aaKnown RBP13.42□□□□□ -0.26
SDC1-204ENST00000429035 FAM155BO75949 473 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 LRATO95237 230 aa13.42□□□□□ -0.26
SDC1-204ENST00000429035 CELA3AP09093 270 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms