RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 SAMD14Q8IZD0 417 aaPredicted RBP16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 CA13Q8N1Q1 262 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 METTL27Q8N6F8 245 aaPredicted RBP16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 DNAJB14Q8TBM8 379 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 CIDECQ96AQ7 238 aaPredicted RBP16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 MVB12AQ96EY5 273 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 CCDC115Q96NT0 180 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 CDRT15Q96T59 188 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 CGREF1Q99674 301 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 SH3GL1Q99961 368 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 SLC39A3Q9BRY0 314 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 YIPF2Q9BWQ6 316 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 RPF2Q9H7B2 306 aaKnown RBP16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 SLC35C2Q9NQQ7 365 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 HCN3Q9P1Z3 774 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 C5AR2Q9P296 337 aa16.19■□□□□ 0.18
CCDC28B-202ENST00000421922 EFCAB7A8K855 629 aa16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 H0YIG0 161 aa16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 PRKRAO75569 313 aaKnown RBP16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 EFNA1P20827 205 aaPredicted RBP16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 SOAT1P35610 550 aa16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 SLC7A2P52569 658 aa16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 CORO7P57737 925 aa16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 PHC1P78364 1004 aa16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 COL9A2Q14055 689 aaPredicted RBP16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 SAMD4BQ5PRF9 694 aaKnown RBP16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 SLC48A1Q6P1K1 146 aa16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 ZNF621Q6ZSS3 439 aa16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 ULK2Q8IYT8 1036 aa16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 CLECL1Q8IZS7 167 aa16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 OR5T3Q8NGG3 340 aa16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 ZNF282Q9UDV7 671 aaPredicted RBP16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 AP3M1Q9Y2T2 418 aa16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 PCDHGA7Q9Y5G6 932 aa16.18■□□□□ 0.18
CCDC28B-202ENST00000421922 DMXL1Q9Y485 3027 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 BLACEA4D250 179 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 EVPLLA8MZ36 301 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 DSCR3O14972 297 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 ZNF749O43361 778 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 CHST10O43529 356 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 GDF9O60383 454 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 STAMBPO95630 424 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 C6orf47O95873 294 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 GSNP06396 782 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 HBQ1P09105 142 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 ATXN8OSP0DMR3 200 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 PPP2R1BP30154 601 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 GPC1P35052 558 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 HNRNPFP52597 415 aaKnown RBP16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 WNT3P56703 355 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 B3GNT8Q7Z7M8 397 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 BPHLQ86WA6 291 aaPredicted RBP16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 PPP1R3BQ86XI6 285 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 ARHGEF39Q8N4T4 335 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 OR5P2Q8WZ92 322 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 MIEF2Q96C03 454 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 INPP5KQ9BT40 448 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 PAIP1Q9H074 479 aaKnown RBP16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 NEUROD4Q9HD90 331 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 PRDM9Q9NQV7 894 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 TAS2R7Q9NYW3 318 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 KCMF1Q9P0J7 381 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 PCDHGA1Q9Y5H4 931 aa16.17■□□□□ 0.18
CCDC28B-202ENST00000421922 A0A1B0GX78 115 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 FXYD1O00168 92 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 FOXS1O43638 330 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 SCRG1O75711 98 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 PDE5AO76074 875 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 CDK4P11802 303 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 CSNK2A2P19784 350 aaPredicted RBP16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 FBLP22087 321 aaKnown RBP16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 PPIBP23284 216 aaKnown RBP16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 CCKBRP32239 447 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 NCBP2P52298 156 aaKnown RBP eCLIP16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 SNRPNP63162 240 aaKnown RBP16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 SIM1P81133 766 aaPredicted RBP16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 ZFP36L1Q07352 338 aaKnown RBP16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 HSPB3Q12988 150 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 TRIP6Q15654 476 aaKnown RBP16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 SPDYE7PQ495Y7 208 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 LRIF1Q5T3J3 769 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 ARHGAP40Q5TG30 622 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 DLEU7Q6UYE1 221 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 FBXW8Q8N3Y1 598 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 OR4K14Q8NGD5 310 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 OR8J3Q8NGG0 315 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 COL26A1Q96A83 441 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 CCDC124Q96CT7 223 aaKnown RBP16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 CLIP3Q96DZ5 547 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 PEX11GQ96HA9 241 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 CLPTM1LQ96KA5 538 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 CSF3RQ99062 836 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 CMKLR1Q99788 373 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 GPATCH1Q9BRR8 931 aaKnown RBP16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 THUMPD3Q9BV44 507 aaKnown RBP16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 SERHLQ9NQF3 203 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 ENAMQ9NRM1 1142 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 ACSS1Q9NUB1 689 aaPredicted RBP16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 TAS2R9Q9NYW1 312 aa16.16■□□□□ 0.18
CCDC28B-202ENST00000421922 SLAMF8Q9P0V8 285 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms