RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 VMP1Q96GC9 406 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 TRIM45Q9H8W5 580 aaPredicted RBP17.75■□□□□ 0.43
SF3A1-202ENST00000411423 FARSBQ9NSD9 589 aaKnown RBP17.75■□□□□ 0.43
SF3A1-202ENST00000411423 ASB4Q9Y574 426 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 PCDHGB6Q9Y5F9 930 aa17.75■□□□□ 0.43
SF3A1-202ENST00000411423 RP1L1Q8IWN7 2480 aaPredicted RBP17.75■□□□□ 0.43
SF3A1-202ENST00000411423 A0A1W2PPM1 405 aa17.74■□□□□ 0.43
SF3A1-202ENST00000411423 A0A1W2PS29 197 aa17.74■□□□□ 0.43
SF3A1-202ENST00000411423 FOXE1O00358 373 aaPredicted RBP17.74■□□□□ 0.43
SF3A1-202ENST00000411423 DLX3O60479 287 aa17.74■□□□□ 0.43
SF3A1-202ENST00000411423 IFNA16P05015 189 aa17.74■□□□□ 0.43
SF3A1-202ENST00000411423 PTX3P26022 381 aaPredicted RBP17.74■□□□□ 0.43
SF3A1-202ENST00000411423 TRHRP34981 398 aaPredicted RBP17.74■□□□□ 0.43
SF3A1-202ENST00000411423 TNFRSF17Q02223 184 aa17.74■□□□□ 0.43
SF3A1-202ENST00000411423 CUL3Q13618 768 aa17.74■□□□□ 0.43
SF3A1-202ENST00000411423 ELOAQ14241 798 aaKnown RBP17.74■□□□□ 0.43
SF3A1-202ENST00000411423 UNC50Q53HI1 259 aa17.74■□□□□ 0.43
SF3A1-202ENST00000411423 GPR180Q86V85 440 aa17.74■□□□□ 0.43
SF3A1-202ENST00000411423 ATP6V1E2Q96A05 226 aa17.74■□□□□ 0.43
SF3A1-202ENST00000411423 MTBPQ96DY7 904 aa17.74■□□□□ 0.43
SF3A1-202ENST00000411423 FRMD6Q96NE9 622 aa17.74■□□□□ 0.43
SF3A1-202ENST00000411423 C1QTNF3Q9BXJ4 246 aa17.74■□□□□ 0.43
SF3A1-202ENST00000411423 DDX31Q9H8H2 851 aaKnown RBP17.74■□□□□ 0.43
SF3A1-202ENST00000411423 TBK1Q9UHD2 729 aa17.74■□□□□ 0.43
SF3A1-202ENST00000411423 TMCO1Q9UM00 188 aa17.74■□□□□ 0.43
SF3A1-202ENST00000411423 SLC5A6Q9Y289 635 aa17.74■□□□□ 0.43
SF3A1-202ENST00000411423 A0A1W2PR48 441 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 A1L4Q6 167 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 ASPDHA6ND91 283 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 HRKO00198 91 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 PROM1O43490 865 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 ZNF354AO60765 605 aaPredicted RBP17.73■□□□□ 0.43
SF3A1-202ENST00000411423 ITGA10O75578 1167 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 STX4Q12846 297 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 RNFT1Q5M7Z0 435 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 SLC25A25Q6KCM7 469 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 SH2D5Q6ZV89 423 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 DNAJB8Q8NHS0 232 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 PPWD1Q96BP3 646 aaKnown RBP17.73■□□□□ 0.43
SF3A1-202ENST00000411423 REPS1Q96D71 796 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 TMEM237Q96Q45 408 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 TSPAN10Q9H1Z9 355 aaPredicted RBP17.73■□□□□ 0.43
SF3A1-202ENST00000411423 ANKZF1Q9H8Y5 726 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 PSD3Q9NYI0 1048 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 PSMC3IPQ9P2W1 217 aaPredicted RBP17.73■□□□□ 0.43
SF3A1-202ENST00000411423 FETUBQ9UGM5 382 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 EMCNQ9ULC0 261 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 POLEQ07864 2286 aa17.73■□□□□ 0.43
SF3A1-202ENST00000411423 CROCCQ5TZA2 2017 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 ZGRF1Q86YA3 2104 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 ARHGAP10A1A4S6 786 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 GLOD5A6NK44 160 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 C17orf105B2RV13 164 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 NME2P1O60361 137 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 SLC25A12O75746 678 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 CLDN1O95832 211 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 PYGBP11216 843 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 GP1BBP13224 206 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 CD46P15529 392 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 NME2P22392 152 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 HSD17B3P37058 310 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 ARL1P40616 181 aaPredicted RBP17.72■□□□□ 0.43
SF3A1-202ENST00000411423 HLCSP50747 726 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 FOLH1Q04609 750 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 RCN2Q14257 317 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 GGTA1PQ4G0N0 100 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 TCHHL1Q5QJ38 904 aaPredicted RBP17.72■□□□□ 0.43
SF3A1-202ENST00000411423 ZNF678Q5SXM1 525 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 LGSNQ5TDP6 509 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 FRG2Q64ET8 278 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 MDGA2Q7Z553 956 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 MILR1Q7Z6M3 343 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.72■□□□□ 0.43
SF3A1-202ENST00000411423 TMEM132CQ8N3T6 1108 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 SLC2A12Q8TD20 617 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 TRPC4APQ8TEL6 797 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 ZNF721Q8TF20 911 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 FRG2BQ96QU4 278 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 RPF2Q9H7B2 306 aaKnown RBP17.72■□□□□ 0.43
SF3A1-202ENST00000411423 PPT2Q9UMR5 302 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 CLCA3PQ9Y6N3 262 aa17.72■□□□□ 0.43
SF3A1-202ENST00000411423 SVILO95425 2214 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 IQANK1A0A1B0GTG1 560 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 ZNHIT1O43257 154 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 LRRTM2O43300 516 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 ZFAND5O76080 213 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 OR4F21O95013 312 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 UNC5CO95185 931 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 AIFM1O95831 613 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 CRYABP02511 175 aaKnown RBP17.71■□□□□ 0.43
SF3A1-202ENST00000411423 STSP08842 583 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 FAM58BPP0C7Q3 252 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 STT3AP46977 705 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 CYB561P49447 251 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 ARFIP1P53367 373 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 HERVK_113P63132 956 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 PHEXP78562 749 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 SERTAD2Q14140 314 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 MAPKAPK3Q16644 382 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 C4orf17Q53FE4 359 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms