RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 GRHL3Q8TE85 626 aa8.67□□□□□ -1.02
LIG4-202ENST00000405925 GAL3ST3Q96A11 431 aa8.67□□□□□ -1.02
LIG4-202ENST00000405925 Q96MT0 163 aa8.67□□□□□ -1.02
LIG4-202ENST00000405925 ZNF347Q96SE7 839 aa8.67□□□□□ -1.02
LIG4-202ENST00000405925 PKP2Q99959 881 aa8.67□□□□□ -1.02
LIG4-202ENST00000405925 ABI3Q9P2A4 366 aa8.67□□□□□ -1.02
LIG4-202ENST00000405925 WBP11Q9Y2W2 641 aaKnown RBP8.67□□□□□ -1.02
LIG4-202ENST00000405925 GPR45Q9Y5Y3 372 aa8.67□□□□□ -1.02
LIG4-202ENST00000405925 SGK494L7N484 410 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 POLR1CO15160 346 aaPredicted RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 MAN1A2O60476 641 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 SEMA3DO95025 777 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 COL9A1P20849 921 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 GPX3P22352 226 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 HIST1H1TP22492 207 aaPredicted RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 ATP5A1P25705 553 aaKnown RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 ACADLP28330 430 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 KDELR2P33947 212 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 LGI4Q8N135 537 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 FAM98AQ8NCA5 519 aaKnown RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 OR10G2Q8NGC3 310 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 OR56A3Q8NH54 315 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 NMD3Q96D46 503 aaKnown RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 INPP5KQ9BT40 448 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 WNT16Q9UBV4 365 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 ASXL3Q9C0F0 2248 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 ZNF638Q14966 1978 aaKnown RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 FAM86C2PA6NEL3 165 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 H0YGG7 62 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 H0YIV9 168 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 SCDO00767 359 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 KLHL18O94889 574 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 DRD3P35462 400 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 PFN3P60673 137 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 ARF3P61204 181 aaPredicted RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 B4GALNT1Q00973 533 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 RCAN2Q14206 197 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 LAPTM4AQ15012 233 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 NR0B2Q15466 257 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 Q6ZSR9 355 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 IKBIPQ70UQ0 350 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 LUZP2Q86TE4 346 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 DAZLQ92904 295 aaKnown RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 CIDECQ96AQ7 238 aaPredicted RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 SH3YL1Q96HL8 342 aaPredicted RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 PYURFQ96I23 114 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 DEPDC7Q96QD5 511 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 ADI1Q9BV57 179 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 EPS8L2Q9H6S3 715 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 PLAC1Q9HBJ0 212 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 C8orf4Q9NR00 106 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 PPIEQ9UNP9 301 aaKnown RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 ASB1Q9Y576 335 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 ASCC3Q8N3C0 2202 aaKnown RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 NME4O00746 187 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 PCDHGA12O60330 932 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 NPPBP16860 134 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 CCR5P51681 352 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 TAS2R38P59533 333 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 POU6F2P78424 691 aaPredicted RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 TUBB3Q13509 450 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 PRPF38BQ5VTL8 546 aaKnown RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 ZNF544Q6NX49 715 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 SHISA6Q6ZSJ9 500 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.66□□□□□ -1.02
LIG4-202ENST00000405925 SVOPLQ8N434 492 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 SCAIQ8N9R8 606 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 ZNF527Q8NB42 609 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 OR5K1Q8NHB7 308 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.66□□□□□ -1.02
LIG4-202ENST00000405925 UBTD2Q8WUN7 234 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 TMBIM1Q969X1 311 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 POLR2J3Q9H1A7 115 aaKnown RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 OR51I1Q9H343 314 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 VAPAQ9P0L0 249 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 NKX1-2Q9UD57 310 aaPredicted RBP8.66□□□□□ -1.02
LIG4-202ENST00000405925 PRODH2Q9UF12 536 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 PCDHB14Q9Y5E9 798 aa8.66□□□□□ -1.02
LIG4-202ENST00000405925 GRXCR2A6NFK2 248 aa8.65□□□□□ -1.02
LIG4-202ENST00000405925 GFYI3L273 518 aa8.65□□□□□ -1.02
LIG4-202ENST00000405925 CEACAM5P06731 702 aa8.65□□□□□ -1.02
LIG4-202ENST00000405925 H1F0P07305 194 aaKnown RBP8.65□□□□□ -1.02
LIG4-202ENST00000405925 T-ENOLP0DO92 83 aa8.65□□□□□ -1.02
LIG4-202ENST00000405925 ST13P50502 369 aaKnown RBP8.65□□□□□ -1.02
LIG4-202ENST00000405925 RNF144AP50876 292 aaPredicted RBP8.65□□□□□ -1.02
LIG4-202ENST00000405925 BNC1Q01954 994 aa8.65□□□□□ -1.02
LIG4-202ENST00000405925 COQ5Q5HYK3 327 aa8.65□□□□□ -1.02
LIG4-202ENST00000405925 L3MBTL4Q8NA19 623 aa8.65□□□□□ -1.02
LIG4-202ENST00000405925 GATSQ8NAP1 163 aa8.65□□□□□ -1.02
LIG4-202ENST00000405925 PROKR1Q8TCW9 393 aa8.65□□□□□ -1.02
LIG4-202ENST00000405925 MAL2Q969L2 176 aa8.65□□□□□ -1.02
LIG4-202ENST00000405925 KIAA1143Q96AT1 154 aaPredicted RBP8.65□□□□□ -1.02
LIG4-202ENST00000405925 MTERF3Q96E29 417 aa8.65□□□□□ -1.02
LIG4-202ENST00000405925 ZNF570Q96NI8 536 aa8.65□□□□□ -1.02
LIG4-202ENST00000405925 MAP3K3Q99759 626 aa8.65□□□□□ -1.02
LIG4-202ENST00000405925 DCUN1D5Q9BTE7 237 aa8.65□□□□□ -1.02
LIG4-202ENST00000405925 KIR3DX1Q9H7L2 352 aa8.65□□□□□ -1.02
LIG4-202ENST00000405925 KLRF1Q9NZS2 232 aa8.65□□□□□ -1.02
LIG4-202ENST00000405925 PCDHB3Q9Y5E6 796 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms