RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 LSMEM2Q8N112 164 aa7.88□□□□□ -1.15
PTPRD-204ENST00000397606 LMNTD1Q8N9Z9 388 aa7.88□□□□□ -1.15
PTPRD-204ENST00000397606 DTWD2Q8NBA8 298 aa7.88□□□□□ -1.15
PTPRD-204ENST00000397606 BBS10Q8TAM1 723 aa7.88□□□□□ -1.15
PTPRD-204ENST00000397606 KLHL6Q8WZ60 621 aa7.88□□□□□ -1.15
PTPRD-204ENST00000397606 EID2BQ96D98 161 aa7.88□□□□□ -1.15
PTPRD-204ENST00000397606 C5orf34Q96MH7 638 aa7.88□□□□□ -1.15
PTPRD-204ENST00000397606 MAP3K3Q99759 626 aa7.88□□□□□ -1.15
PTPRD-204ENST00000397606 PRRX2Q99811 253 aa7.88□□□□□ -1.15
PTPRD-204ENST00000397606 NT5DC2Q9H857 520 aa7.88□□□□□ -1.15
PTPRD-204ENST00000397606 ZNF304Q9HCX3 659 aa7.88□□□□□ -1.15
PTPRD-204ENST00000397606 EXOSC4Q9NPD3 245 aaKnown RBP7.88□□□□□ -1.15
PTPRD-204ENST00000397606 SLC39A1Q9NY26 324 aa7.88□□□□□ -1.15
PTPRD-204ENST00000397606 PDP2Q9P2J9 529 aa7.88□□□□□ -1.15
PTPRD-204ENST00000397606 IKZF3Q9UKT9 509 aa7.88□□□□□ -1.15
PTPRD-204ENST00000397606 LSM1O15116 133 aaKnown RBP7.87□□□□□ -1.15
PTPRD-204ENST00000397606 GADD45GO95257 159 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 MT-ND1P03886 318 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 MYL12AP19105 171 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 CSNK1G2P78368 415 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 NCF4Q15080 339 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.87□□□□□ -1.15
PTPRD-204ENST00000397606 TMEM107Q6UX40 140 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 SVOPQ8N4V2 548 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 ZSCAN1Q8NBB4 408 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 CCL4L1Q8NHW4 92 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 KAT2AQ92830 837 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 CDC6Q99741 560 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 CUTCQ9NTM9 273 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 MKL2Q9ULH7 1088 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 HCN4Q9Y3Q4 1203 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 TESMINQ9Y4I5 508 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 SGK494L7N484 410 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 HAT1O14929 419 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 PRKD3O94806 890 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 CCNB2O95067 398 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 TNFAIP8O95379 198 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 IFNGP01579 166 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 RORAP35398 523 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 XCR1P46094 333 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 CLK1P49759 484 aaKnown RBP7.87□□□□□ -1.15
PTPRD-204ENST00000397606 TRIM46Q7Z4K8 759 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 OR52J3Q8NH60 311 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 GIPC3Q8TF64 312 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 RAB8BQ92930 207 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 AURKBQ96GD4 344 aaPredicted RBP7.87□□□□□ -1.15
PTPRD-204ENST00000397606 C3orf30Q96M34 536 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 ARRDC1-AS1Q9H2J1 176 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 FGF21Q9NSA1 209 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 CLN6Q9NWW5 311 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 BTNL2Q9UIR0 455 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 MYRFQ9Y2G1 1151 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 IFT52Q9Y366 437 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 LYVE1Q9Y5Y7 322 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 FAM86C2PA6NEL3 165 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 MCIDASD6RGH6 385 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 TP53I11O14683 189 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 VILLO15195 856 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 CSF2P04141 144 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 RPS9P46781 194 aaKnown RBP7.87□□□□□ -1.15
PTPRD-204ENST00000397606 ZP2Q05996 745 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 TOP3AQ13472 1001 aaPredicted RBP7.87□□□□□ -1.15
PTPRD-204ENST00000397606 VMACQ2NL98 169 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 GARNL3Q5VVW2 1013 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.87□□□□□ -1.15
PTPRD-204ENST00000397606 FAM110BQ8TC76 370 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 VWCEQ96DN2 955 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 CIB1Q99828 191 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 MACROD1Q9BQ69 325 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 CRB3Q9BUF7 120 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 C1QTNF3Q9BXJ4 246 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 PRRG4Q9BZD6 226 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 SERINC1Q9NRX5 453 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 STARD5Q9NSY2 213 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 KLRF1Q9NZS2 232 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 RNASET2O00584 256 aaKnown RBP7.87□□□□□ -1.15
PTPRD-204ENST00000397606 NME6O75414 186 aaPredicted RBP7.87□□□□□ -1.15
PTPRD-204ENST00000397606 SMNDC1O75940 238 aaKnown RBP eCLIP7.87□□□□□ -1.15
PTPRD-204ENST00000397606 OPN1SWP03999 348 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 GLB1P16278 677 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 IGFBP5P24593 272 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 GABRA3P34903 492 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 TSFMP43897 325 aaKnown RBP7.87□□□□□ -1.15
PTPRD-204ENST00000397606 YAP1P46937 504 aaKnown RBP7.87□□□□□ -1.15
PTPRD-204ENST00000397606 SLC6A12P48065 614 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 EMP2P54851 167 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 CBLBQ13191 982 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 ZNF551Q7Z340 670 aaPredicted RBP7.87□□□□□ -1.15
PTPRD-204ENST00000397606 NR4A3Q92570 626 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 TMEM125Q96AQ2 219 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 ALOXE3Q9BYJ1 711 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.87□□□□□ -1.15
PTPRD-204ENST00000397606 USE1Q9NZ43 259 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 GPR45Q9Y5Y3 372 aa7.87□□□□□ -1.15
PTPRD-204ENST00000397606 KLK8O60259 260 aa7.86□□□□□ -1.15
PTPRD-204ENST00000397606 ACADLP28330 430 aa7.86□□□□□ -1.15
PTPRD-204ENST00000397606 SERPINB10P48595 397 aa7.86□□□□□ -1.15
PTPRD-204ENST00000397606 OR1D5P58170 312 aa7.86□□□□□ -1.15
PTPRD-204ENST00000397606 STARD6P59095 220 aa7.86□□□□□ -1.15
PTPRD-204ENST00000397606 LGALS3BPQ08380 585 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms