RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 MTHFD1P11586 935 aaKnown RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 ENGP17813 658 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 LHCGRP22888 699 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 ACADLP28330 430 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 UFM1P61960 85 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 SHQ1Q6PI26 577 aaKnown RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 SYT13Q7L8C5 426 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 NEIL2Q969S2 332 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 CCNL2Q96S94 520 aaPredicted RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 COPS4Q9BT78 406 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 ACPTQ9BZG2 426 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 ANKRD19PQ9H560 264 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 RPF2Q9H7B2 306 aaKnown RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 RC3H2Q9HBD1 1191 aaKnown RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 SLC17A6Q9P2U8 582 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 SSR3Q9UNL2 185 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 HIVEP3Q5T1R4 2406 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 TRIM24O15164 1050 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 ZBTB11O95625 1053 aaPredicted RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 NUDT14O95848 222 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 ICAM2P13598 275 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 XRCC1P18887 633 aaPredicted RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 EN2P19622 333 aaPredicted RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 CNR2P34972 360 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 PCGF2P35227 344 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 SLC6A12P48065 614 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 SELENOWP63302 87 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 HSPB3Q12988 150 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 SNTA1Q13424 505 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 TRAM1Q15629 374 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 SLC27A4Q6P1M0 643 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 RINLQ6ZS11 566 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 TSPAN33Q86UF1 283 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 ZNF366Q8N895 744 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 OR4E2Q8NGC2 313 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 DNAJA4Q8WW22 397 aaPredicted RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 PACSIN3Q9UKS6 424 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 MAP4K5Q9Y4K4 846 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 NAV3Q8IVL0 2385 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 A0A1B0GW55 424 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 EI24O14681 340 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 ITGA10O75578 1167 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 CCNB2O95067 398 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 ADAP00813 363 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 UBTFL6P0CB48 400 aaPredicted RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 DUX4L2P0CJ85 424 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 DUX4L3P0CJ86 424 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 DUX4L4P0CJ87 422 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 DUX4L5P0CJ88 424 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 DUX4L6P0CJ89 424 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 DUX4L7P0CJ90 424 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 ERFP50548 548 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 C21orf58P58505 322 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 GABARAPL2P60520 117 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 LCN1P1Q5VSP4 162 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 NANOGNBQ7Z5D8 188 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 CAMKMTQ7Z624 323 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 PDSS2Q86YH6 399 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 OR2L8Q8NGY9 312 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 ZFYVE19Q96K21 471 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 DGAT2Q96PD7 388 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 KXD1Q9BQD3 176 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 RHBGQ9H310 441 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 MTHFD2LQ9H903 347 aaPredicted RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 DUX4Q9UBX2 424 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 INTS6Q9UL03 887 aaKnown RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 FREM1Q5H8C1 2179 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 MED13Q9UHV7 2174 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 CHD7Q9P2D1 2997 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 BPTFQ12830 3046 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 PLXNA4Q9HCM2 1894 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 TMEM233B4DJY2 109 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 KPNA4O00629 521 aaPredicted RBP3.23□□□□□ -1.89
VPS13C-203ENST00000395896 TACSTD2P09758 323 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 F8A1P23610 371 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 RORAP35398 523 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 RPS13P62277 151 aaKnown RBP3.23□□□□□ -1.89
VPS13C-203ENST00000395896 SLC29A4Q7RTT9 530 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 COL21A1Q96P44 957 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 BOCQ9BWV1 1114 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 ANKRD60Q9BZ19 345 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 CCL26Q9Y258 94 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 NUMBLQ9Y6R0 609 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 OBSL1O75147 1896 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 PRAMEF2O60811 474 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 RASAL1O95294 804 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 TOP3BO95985 862 aaKnown RBP3.23□□□□□ -1.89
VPS13C-203ENST00000395896 PORP16435 677 aaPredicted RBP3.23□□□□□ -1.89
VPS13C-203ENST00000395896 NT5EP21589 574 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 NEK2P51955 445 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 HNRNPFP52597 415 aaKnown RBP3.23□□□□□ -1.89
VPS13C-203ENST00000395896 SCARB2Q14108 478 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 KEAP1Q14145 624 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 OR4C11Q6IEV9 310 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 FAM220AQ7Z4H9 259 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 MIEF2Q96C03 454 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 CMKLR1Q99788 373 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 TEX101Q9BY14 249 aa3.23□□□□□ -1.89
VPS13C-203ENST00000395896 C12orf65Q9H3J6 166 aaKnown RBP3.23□□□□□ -1.89
VPS13C-203ENST00000395896 PIF1Q9H611 641 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms