RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 SERPINB5P36952 375 aa20.33■□□□□ 0.84
CLN3-207ENST00000395653 STX4Q12846 297 aa20.33■□□□□ 0.84
CLN3-207ENST00000395653 SERTAD2Q14140 314 aa20.33■□□□□ 0.84
CLN3-207ENST00000395653 C18orf63Q68DL7 685 aa20.33■□□□□ 0.84
CLN3-207ENST00000395653 CUZD1Q86UP6 607 aa20.33■□□□□ 0.84
CLN3-207ENST00000395653 HOMEZQ8IX15 550 aa20.33■□□□□ 0.84
CLN3-207ENST00000395653 TANKQ92844 425 aa20.33■□□□□ 0.84
CLN3-207ENST00000395653 WDR41Q9HAD4 459 aa20.33■□□□□ 0.84
CLN3-207ENST00000395653 TNFRSF12AQ9NP84 129 aa20.33■□□□□ 0.84
CLN3-207ENST00000395653 ADAP2Q9NPF8 381 aa20.33■□□□□ 0.84
CLN3-207ENST00000395653 HEMK1Q9Y5R4 338 aaPredicted RBP20.33■□□□□ 0.84
CLN3-207ENST00000395653 A0A1W2PR48 441 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 LDB3O75112 727 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 ZWINTO95229 277 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 NR2F6P10588 404 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 CHN1P15882 459 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 SERPINB4P48594 390 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 IGLV3-21P80748 117 aaPredicted RBP20.32■□□□□ 0.84
CLN3-207ENST00000395653 BIKQ13323 160 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 MFAP5Q13361 173 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 ELAVL1Q15717 326 aaKnown RBP20.32■□□□□ 0.84
CLN3-207ENST00000395653 CCNYL2Q5T2Q4 361 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 C1orf52Q8N6N3 182 aaKnown RBP20.32■□□□□ 0.84
CLN3-207ENST00000395653 SIRT6Q8N6T7 355 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 AMER2Q8N7J2 671 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 CHTF18Q8WVB6 975 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 ANKRD9Q96BM1 317 aaPredicted RBP20.32■□□□□ 0.84
CLN3-207ENST00000395653 LMF1Q96S06 567 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 ALOXE3Q9BYJ1 711 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 SHCBP1LQ9BZQ2 653 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 EPS8L2Q9H6S3 715 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 EML4Q9HC35 981 aaKnown RBP20.32■□□□□ 0.84
CLN3-207ENST00000395653 ZBTB20Q9HC78 741 aaPredicted RBP20.32■□□□□ 0.84
CLN3-207ENST00000395653 PNO1Q9NRX1 252 aaKnown RBP20.32■□□□□ 0.84
CLN3-207ENST00000395653 ARGLU1Q9NWB6 273 aaPredicted RBP20.32■□□□□ 0.84
CLN3-207ENST00000395653 PTGFRNQ9P2B2 879 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 VTI1BQ9UEU0 232 aa20.32■□□□□ 0.84
CLN3-207ENST00000395653 AZIN1O14977 448 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 SUV39H1O43463 412 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 FGF17O60258 216 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 GUCY1B2O75343 617 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 MYO1DO94832 1006 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 AIFM1O95831 613 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 DHRS4L1P0CG22 281 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 MAPK12P53778 367 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 SPIN4Q56A73 249 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 H3F3CQ6NXT2 135 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 ZCCHC23Q6ZST2 131 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 TRIM46Q7Z4K8 759 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 NUDCD3Q8IVD9 361 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 RBMXL3Q8N7X1 1067 aaKnown RBP20.31■□□□□ 0.84
CLN3-207ENST00000395653 NFAM1Q8NET5 270 aaPredicted RBP20.31■□□□□ 0.84
CLN3-207ENST00000395653 OR6Y1Q8NGX8 325 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 ELP5Q8TE02 316 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 KCNK13Q9HB14 408 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 TMBIM4Q9HC24 238 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 TEX10Q9NXF1 929 aaPredicted RBP20.31■□□□□ 0.84
CLN3-207ENST00000395653 PPIEQ9UNP9 301 aaKnown RBP20.31■□□□□ 0.84
CLN3-207ENST00000395653 ZNF462Q96JM2 2506 aa20.31■□□□□ 0.84
CLN3-207ENST00000395653 A8MUA0 341 aa20.3■□□□□ 0.84
CLN3-207ENST00000395653 BIRC5O15392 142 aa20.3■□□□□ 0.84
CLN3-207ENST00000395653 CHRNGP07510 517 aa20.3■□□□□ 0.84
CLN3-207ENST00000395653 UQCRHP07919 91 aa20.3■□□□□ 0.84
CLN3-207ENST00000395653 SERPINB3P29508 390 aa20.3■□□□□ 0.84
CLN3-207ENST00000395653 HMGCS1Q01581 520 aa20.3■□□□□ 0.84
CLN3-207ENST00000395653 MPP2Q14168 576 aa20.3■□□□□ 0.84
CLN3-207ENST00000395653 ARL13AQ5H913 290 aaPredicted RBP20.3■□□□□ 0.84
CLN3-207ENST00000395653 RNF165Q6ZSG1 346 aa20.3■□□□□ 0.84
CLN3-207ENST00000395653 TMEM132CQ8N3T6 1108 aa20.3■□□□□ 0.84
CLN3-207ENST00000395653 ZADH2Q8N4Q0 377 aa20.3■□□□□ 0.84
CLN3-207ENST00000395653 B3GNT7Q8NFL0 401 aa20.3■□□□□ 0.84
CLN3-207ENST00000395653 KCNK9Q9NPC2 374 aa20.3■□□□□ 0.84
CLN3-207ENST00000395653 SIRT5Q9NXA8 310 aa20.3■□□□□ 0.84
CLN3-207ENST00000395653 TEKT2Q9UIF3 430 aa20.3■□□□□ 0.84
CLN3-207ENST00000395653 MCM8Q9UJA3 840 aa20.3■□□□□ 0.84
CLN3-207ENST00000395653 PRKRAO75569 313 aaKnown RBP20.29■□□□□ 0.84
CLN3-207ENST00000395653 IFNA16P05015 189 aa20.29■□□□□ 0.84
CLN3-207ENST00000395653 FGF4P08620 206 aa20.29■□□□□ 0.84
CLN3-207ENST00000395653 H2AFXP16104 143 aaPredicted RBP20.29■□□□□ 0.84
CLN3-207ENST00000395653 CD97P48960 835 aa20.29■□□□□ 0.84
CLN3-207ENST00000395653 TRA2BP62995 288 aaKnown RBP20.29■□□□□ 0.84
CLN3-207ENST00000395653 FOLH1Q04609 750 aa20.29■□□□□ 0.84
CLN3-207ENST00000395653 ACSM2AQ08AH3 577 aa20.29■□□□□ 0.84
CLN3-207ENST00000395653 IMPG1Q17R60 797 aa20.29■□□□□ 0.84
CLN3-207ENST00000395653 NADK2Q4G0N4 442 aa20.29■□□□□ 0.84
CLN3-207ENST00000395653 KANK2Q63ZY3 851 aa20.29■□□□□ 0.84
CLN3-207ENST00000395653 ACSM2BQ68CK6 577 aa20.29■□□□□ 0.84
CLN3-207ENST00000395653 CLEC6AQ6EIG7 209 aa20.29■□□□□ 0.84
CLN3-207ENST00000395653 OR52E8Q6IFG1 317 aa20.29■□□□□ 0.84
CLN3-207ENST00000395653 SCIMPQ6UWF3 145 aa20.29■□□□□ 0.84
CLN3-207ENST00000395653 LINC00696Q6ZRV3 163 aa20.29■□□□□ 0.84
CLN3-207ENST00000395653 TLCD1Q96CP7 247 aa20.29■□□□□ 0.84
CLN3-207ENST00000395653 C11orf24Q96F05 449 aaPredicted RBP20.29■□□□□ 0.84
CLN3-207ENST00000395653 PKNOX2Q96KN3 472 aa20.29■□□□□ 0.84
CLN3-207ENST00000395653 CLCA3PQ9Y6N3 262 aa20.29■□□□□ 0.84
CLN3-207ENST00000395653 CASRP41180 1078 aa20.28■□□□□ 0.84
CLN3-207ENST00000395653 TAS2R50P59544 299 aa20.28■□□□□ 0.84
CLN3-207ENST00000395653 ID2Q02363 134 aa20.28■□□□□ 0.84
CLN3-207ENST00000395653 NDUFAF5Q5TEU4 345 aa20.28■□□□□ 0.84
CLN3-207ENST00000395653 ABHD17BQ5VST6 288 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms