RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 A0A096LPI6 279 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 LCHNA4D1U4 455 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 A8MVJ9 347 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 AMY2BP19961 511 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 PYCR1P32322 319 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 EMC10Q5UCC4 262 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 OR2T33Q8NG76 320 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 OVCA2Q8WZ82 227 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 NSUN3Q9H649 340 aaKnown RBP11.4□□□□□ -0.58
SYNPO-202ENST00000394243 PCYT1BQ9Y5K3 369 aaPredicted RBP11.4□□□□□ -0.58
SYNPO-202ENST00000394243 E9PI62 339 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 FAAHO00519 579 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 ADAMTS3O15072 1205 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 KCNJ13O60928 360 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 EEDO75530 441 aaKnown RBP11.4□□□□□ -0.58
SYNPO-202ENST00000394243 C8orf89P0DMQ9 161 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 NAA10P41227 235 aaPredicted RBP11.4□□□□□ -0.58
SYNPO-202ENST00000394243 CRISP1P54107 249 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 METTL11BQ5VVY1 283 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 GPR139Q6DWJ6 353 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 FRS2Q8WU20 508 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 DCUN1D4Q92564 292 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 OR2M4Q96R27 311 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 TTPALQ9BTX7 342 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 OR51J1Q9H342 316 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 FZD3Q9NPG1 666 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 ACSL6Q9UKU0 697 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 ATRNO75882 1429 aa11.4□□□□□ -0.58
SYNPO-202ENST00000394243 SLC22A5O76082 557 aa11.4□□□□□ -0.59
SYNPO-202ENST00000394243 WASP42768 502 aa11.4□□□□□ -0.59
SYNPO-202ENST00000394243 TSPYL5Q86VY4 417 aaPredicted RBP11.4□□□□□ -0.59
SYNPO-202ENST00000394243 OR56A3Q8NH54 315 aa11.4□□□□□ -0.59
SYNPO-202ENST00000394243 CDCA5Q96FF9 252 aa11.4□□□□□ -0.59
SYNPO-202ENST00000394243 CD244Q9BZW8 370 aa11.4□□□□□ -0.59
SYNPO-202ENST00000394243 OR6C2Q9NZP2 312 aa11.4□□□□□ -0.59
SYNPO-202ENST00000394243 J3KR12 359 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 NDUFS4O43181 175 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 MITFO75030 526 aaPredicted RBP11.39□□□□□ -0.59
SYNPO-202ENST00000394243 BMP2P12643 396 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 RAB6AP20340 208 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 ART1P52961 327 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 LILRA4P59901 499 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 LAS2Q8IYD9 372 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 C2CD4AQ8NCU7 369 aaPredicted RBP11.39□□□□□ -0.59
SYNPO-202ENST00000394243 SLC22A8Q8TCC7 542 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 MYRFLQ96LU7 910 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 TMEM68Q96MH6 324 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 MCHR1Q99705 422 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 KATNBL1Q9H079 304 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 OR51B5Q9H339 312 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 IL37Q9NZH6 218 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 ASB3Q9Y575 518 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 LRRTM2O43300 516 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 LCMT2O60294 686 aaKnown RBP11.39□□□□□ -0.59
SYNPO-202ENST00000394243 MTX2O75431 263 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 AHSA1O95433 338 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 UCHL1P09936 223 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 ZBTB48P10074 688 aaPredicted RBP11.39□□□□□ -0.59
SYNPO-202ENST00000394243 CD79BP40259 229 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 OGDHQ02218 1023 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 CHRNA6Q15825 494 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 PAPD5Q8NDF8 572 aaKnown RBP11.39□□□□□ -0.59
SYNPO-202ENST00000394243 OR8J1Q8NGP2 316 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 FBXO27Q8NI29 283 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 TRMT10AQ8TBZ6 339 aaKnown RBP11.39□□□□□ -0.59
SYNPO-202ENST00000394243 GAB3Q8WWW8 586 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 FKBP10Q96AY3 582 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 FAM124BQ9H5Z6 455 aaPredicted RBP11.39□□□□□ -0.59
SYNPO-202ENST00000394243 PNO1Q9NRX1 252 aaKnown RBP11.39□□□□□ -0.59
SYNPO-202ENST00000394243 PCDHGA6Q9Y5G7 932 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 NUBP2Q9Y5Y2 271 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 RIC1Q4ADV7 1423 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 ATE1O95260 518 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 PRNPP04156 253 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 HOXC12P31275 282 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 LRRC32Q14392 662 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 GAS6Q14393 721 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 AGAP6Q5VW22 663 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 AMZ2Q86W34 360 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 ZNF280BQ86YH2 543 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 PAQR8Q8TEZ7 354 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 CIDECQ96AQ7 238 aaPredicted RBP11.39□□□□□ -0.59
SYNPO-202ENST00000394243 NSUN5Q96P11 429 aaKnown RBP11.39□□□□□ -0.59
SYNPO-202ENST00000394243 AGAP4Q96P64 663 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 EPYCQ99645 322 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 VRK1Q99986 396 aaPredicted RBP11.39□□□□□ -0.59
SYNPO-202ENST00000394243 GON7Q9BXV9 100 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 RANGRFQ9HD47 186 aaPredicted RBP11.39□□□□□ -0.59
SYNPO-202ENST00000394243 KLHL9Q9P2J3 617 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 CA5BQ9Y2D0 317 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 TNS2Q63HR2 1409 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 POM121CA8CG34 1229 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 SCDO00767 359 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 VIPR1P32241 457 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 C3orf33Q6P1S2 294 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 TERB2Q8NHR7 220 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 NR4A3Q92570 626 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 CACNG2Q9Y698 323 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 GXYLT2A0PJZ3 443 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 GRXCR1A8MXD5 290 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms