RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 FOLR1P15328 257 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 S100A3P33764 101 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 CLCN2P51788 898 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 E2F2Q14209 437 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 MAP7Q14244 749 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 RUNDC3AQ59EK9 446 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 C3orf38Q5JPI3 329 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 RNF220Q5VTB9 566 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 ATG9BQ674R7 924 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 FCRL6Q6DN72 434 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 RNF44Q7L0R7 432 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 PAQR7Q86WK9 346 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 CHERPQ8IWX8 916 aaKnown RBP9.68□□□□□ -0.86
VPS53-202ENST00000389040 RNF175Q8N4F7 328 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 ZNF655Q8N720 491 aaPredicted RBP9.68□□□□□ -0.86
VPS53-202ENST00000389040 TNIP2Q8NFZ5 429 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 UBE2E3Q969T4 207 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 LRFN5Q96NI6 719 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 GBP5Q96PP8 586 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 OR6C1Q96RD1 312 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 NRTNQ99748 197 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 DPH2Q9BQC3 489 aaPredicted RBP9.68□□□□□ -0.86
VPS53-202ENST00000389040 AIF1LQ9BQI0 150 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 ACAT2Q9BWD1 397 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 IKZF5Q9H5V7 419 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 RMND5AQ9H871 391 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 GEMIN8Q9NWZ8 242 aaKnown RBP9.68□□□□□ -0.86
VPS53-202ENST00000389040 VPS29Q9UBQ0 182 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 PILRAQ9UKJ1 303 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 PPT2Q9UMR5 302 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 PCDHGB4Q9UN71 923 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 MAN2B2Q9Y2E5 1009 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 PCDHGB5Q9Y5G0 923 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 RP1P56715 2156 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 CACNA1AO00555 2505 aa9.68□□□□□ -0.86
VPS53-202ENST00000389040 SPTBN4Q9H254 2564 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 A0A096LPI6 279 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 IGKV1-8A0A0C4DH67 115 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 TRBC2A0A5B9 178 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 CDH1P12830 882 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 HSD3B1P14060 373 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 HSD3B2P26439 372 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 SERPINB1P30740 379 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 AHRP35869 848 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 GABRA4P48169 554 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 ARSFP54793 590 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 ITGA1P56199 1179 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 POLE2P56282 527 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 PHC1P78364 1004 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 TSTA3Q13630 321 aaPredicted RBP9.67□□□□□ -0.86
VPS53-202ENST00000389040 GK3PQ14409 553 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 ATP6AP1Q15904 470 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 ZIC1Q15915 447 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 FAM214AQ32MH5 1076 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 PGS1Q32NB8 556 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 PAGE2BQ5JRK9 111 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 LRIF1Q5T3J3 769 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 FBXO42Q6P3S6 717 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 NXPE4Q6UWF7 544 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 MSANTD1Q6ZTZ1 278 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 EPHX4Q8IUS5 362 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 MCATQ8IVS2 390 aaKnown RBP9.67□□□□□ -0.86
VPS53-202ENST00000389040 RIMKLAQ8IXN7 391 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 KRT78Q8N1N4 520 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 CBR4Q8N4T8 237 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 OR10A6Q8NH74 314 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 RERGQ96A58 199 aaPredicted RBP9.67□□□□□ -0.86
VPS53-202ENST00000389040 ZNF501Q96CX3 271 aaPredicted RBP9.67□□□□□ -0.86
VPS53-202ENST00000389040 ITCHQ96J02 903 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 MTERF1Q99551 399 aaKnown RBP9.67□□□□□ -0.86
VPS53-202ENST00000389040 C9orf16Q9BUW7 83 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 EFCAB11Q9BUY7 163 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 EBPLQ9BY08 206 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 NLNQ9BYT8 704 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 FAM192AQ9GZU8 254 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 PAIP1Q9H074 479 aaKnown RBP9.67□□□□□ -0.86
VPS53-202ENST00000389040 BRF2Q9HAW0 419 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 SLC6A20Q9NP91 592 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 SERHLQ9NQF3 203 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 C8orf4Q9NR00 106 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 OCIAD1Q9NX40 245 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 PISDQ9UG56 409 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 ADGRE2Q9UHX3 823 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 SRPK3Q9UPE1 567 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 V9GYQ6 96 aa9.67□□□□□ -0.86
VPS53-202ENST00000389040 ARHGAP10A1A4S6 786 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 FITM1A5D6W6 292 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 H7BY64 318 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 GSTA4O15217 222 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 PRMT3O60678 531 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 LRATO95237 230 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 TNFAIP8O95379 198 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 FAM58BPP0C7Q3 252 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 C1GALT1C1LP0DN25 315 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 CCL4P13236 92 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 PRPS1L1P21108 318 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 PSMB5P28074 263 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 CLDN6P56747 220 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 CSNK1G2P78368 415 aa9.66□□□□□ -0.86
VPS53-202ENST00000389040 TXNL4AP83876 142 aaKnown RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms