RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 PPIGQ13427 754 aaKnown RBP eCLIP8.36□□□□□ -1.07
RTN3-202ENST00000339997 EMC10Q5UCC4 262 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 C1orf189Q5VU69 101 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 ISCA2Q86U28 154 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 NUDT13Q86X67 352 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 RNF175Q8N4F7 328 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 THAP6Q8TBB0 222 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 SORCS1Q8WY21 1168 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 SRA1Q9HD15 236 aaKnown RBP8.36□□□□□ -1.07
RTN3-202ENST00000339997 ERVK-11Q9UQG0 969 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 WNT6Q9Y6F9 365 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 ENTPD6O75354 484 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 RPLP2P05387 115 aaKnown RBP8.36□□□□□ -1.07
RTN3-202ENST00000339997 ATP1B2P14415 290 aaPredicted RBP8.36□□□□□ -1.07
RTN3-202ENST00000339997 CMPK1P30085 196 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 CNR2P34972 360 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 CA5AP35218 305 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 GPR4P46093 362 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 SP3Q02447 781 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 ARHGAP1Q07960 439 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 PON3Q15166 354 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 ZDHHC20Q5W0Z9 365 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 CES4AQ5XG92 561 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 RBM12BQ8IXT5 1001 aaKnown RBP8.36□□□□□ -1.07
RTN3-202ENST00000339997 SRFBP1Q8NEF9 429 aaKnown RBP8.36□□□□□ -1.07
RTN3-202ENST00000339997 CD180Q99467 661 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 MCHR1Q99705 422 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 CACNG6Q9BXT2 260 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 ADAMTS10Q9H324 1103 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 PNO1Q9NRX1 252 aaKnown RBP8.36□□□□□ -1.07
RTN3-202ENST00000339997 VAPAQ9P0L0 249 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 B4GALT6Q9UBX8 382 aa8.36□□□□□ -1.07
RTN3-202ENST00000339997 MYH7P12883 1935 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 SNED1Q8TER0 1413 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 A0A1B0GTW7 788 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 SOCS7O14512 581 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 WNT9AO14904 365 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 TNFSF12O43508 249 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 PRICKLE3O43900 615 aaPredicted RBP8.35□□□□□ -1.07
RTN3-202ENST00000339997 SFTPBP07988 381 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 TYRP1P17643 537 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 MSR1P21757 451 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 RGS19P49795 217 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 PPP5CP53041 499 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 PITPNAQ00169 270 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 ZNF45Q02386 682 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 FOXM1Q08050 763 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 PCBP1Q15365 356 aaKnown RBP eCLIP8.35□□□□□ -1.079e-12■■□□□ 13.5
RTN3-202ENST00000339997 QSOX2Q6ZRP7 698 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 ZNF551Q7Z340 670 aaPredicted RBP8.35□□□□□ -1.07
RTN3-202ENST00000339997 FTMTQ8N4E7 242 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 CYB561A3Q8NBI2 242 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 WDR20Q8TBZ3 569 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 TMEM41AQ96HV5 264 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 NPLQ9BXD5 320 aaPredicted RBP8.35□□□□□ -1.07
RTN3-202ENST00000339997 OSBPL2Q9H1P3 480 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 IL37Q9NZH6 218 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 MGAT4CQ9UBM8 478 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 KLF15Q9UIH9 416 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 MYH11P35749 1972 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 WNK3Q9BYP7 1800 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 DOPEY2Q9Y3R5 2298 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 SLC33A1O00400 549 aaPredicted RBP8.35□□□□□ -1.07
RTN3-202ENST00000339997 RETP07949 1114 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 LIPCP11150 499 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 ERVPABLB-1P60509 514 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 NIPAL4Q0D2K0 466 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 GAS6Q14393 721 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 POU4F3Q15319 338 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 NTRK2Q16620 822 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 TMC8Q8IU68 726 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 ARFGAP1Q8N6T3 406 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 OR2AP1Q8NGE2 309 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 SNAPC3Q92966 411 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 POP5Q969H6 163 aaKnown RBP8.35□□□□□ -1.07
RTN3-202ENST00000339997 MAELQ96JY0 434 aaKnown RBP8.35□□□□□ -1.07
RTN3-202ENST00000339997 EGLN2Q96KS0 407 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 PCDHGB6Q9Y5F9 930 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 LAMB4A4D0S4 1761 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 CLDN4O14493 209 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 PENKP01210 267 aaPredicted RBP8.35□□□□□ -1.07
RTN3-202ENST00000339997 HMGN1P05114 100 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 IL3P08700 152 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 LAMP1P11279 417 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 SRCP12931 536 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 GCAP28676 217 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 PTPN6P29350 595 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 ETV3P41162 512 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 KHKP50053 298 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 HOXC5Q00444 222 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 SPCS2Q15005 226 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 KCNJ8Q15842 424 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 SPIN3Q5JUX0 258 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 PPP2R2DQ66LE6 453 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 NUDT8Q8WV74 236 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 MAFIPQ8WZ33 124 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 PTERQ96BW5 349 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 SLC30A3Q99726 388 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 DUS2Q9NX74 493 aaKnown RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms