RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 CELA2AP08217 269 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 FGF4P08620 206 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 SLC1A6P48664 564 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 ID2Q02363 134 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 STX4Q12846 297 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 STX3Q13277 289 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 IRAK1BP1Q5VVH5 260 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 DDIASQ8IXT1 998 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 KBTBD2Q8IY47 623 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 AMER2Q8N7J2 671 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 FDCSPQ8NFU4 85 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 C9orf43Q8TAL5 461 aaPredicted RBP14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 TWIST2Q8WVJ9 160 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 THOC3Q96J01 351 aaKnown RBP14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 LPAR4Q99677 370 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 WDR77Q9BQA1 342 aaPredicted RBP14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 ZNF395Q9H8N7 513 aaPredicted RBP14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 WDR41Q9HAD4 459 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 ZNF446Q9NWS9 450 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 GPR83Q9NYM4 423 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 TUBD1Q9UJT1 453 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 G3BP2Q9UN86 482 aaKnown RBP14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 CACNA1GO43497 2377 aa14.9□□□□□ -0.02
CCDC28A-201ENST00000332797 GNG14A0A1W2PPG7 69 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 GLOD5A6NK44 160 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 SLC28A1O00337 649 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 RGS14O43566 566 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 PCDH7O60245 1069 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 FGF17O60258 216 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 CEACAM4O75871 244 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 RSL1D1O76021 490 aaKnown RBP14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 LINC00032P0C843 101 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 PPP2R1BP30154 601 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 RAE1P78406 368 aaKnown RBP14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 BTBD16Q32M84 506 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 OR4N5Q8IXE1 308 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 IMMP1LQ96LU5 166 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 NUDT9Q9BW91 350 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 EBPLQ9BY08 206 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 ALOXE3Q9BYJ1 711 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 SEMA4CQ9C0C4 833 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 LHPPQ9H008 270 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 TUBB1Q9H4B7 451 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 PNO1Q9NRX1 252 aaKnown RBP14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 MCM8Q9UJA3 840 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 TP53TG5Q9Y2B4 290 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 CLDN16Q9Y5I7 305 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 PIP5K1BO14986 540 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 GUCY1B2O75343 617 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 SKAP2O75563 359 aaPredicted RBP14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 IFNA16P05015 189 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 SERPINA7P05543 415 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 PRR35P0CG20 571 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 SFTPCP11686 197 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 NR1D1P20393 614 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 TIA1P31483 386 aaKnown RBP eCLIP14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 PGDP52209 483 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 SOX8P57073 446 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 BST1Q10588 318 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 MYBPC3Q14896 1274 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 NR6A1Q15406 480 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 UGT3A2Q3SY77 523 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 NDUFAF5Q5TEU4 345 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 OR52E8Q6IFG1 317 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 RNF165Q6ZSG1 346 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 HOMEZQ8IX15 550 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 ZNF781Q8N8C0 355 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 LSM14AQ8ND56 463 aaKnown RBP14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 SLC39A7Q92504 469 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 TANKQ92844 425 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 UCN3Q969E3 161 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 ANKRD9Q96BM1 317 aaPredicted RBP14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 C20orf27Q9GZN8 174 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 ZNF71Q9NQZ8 489 aaPredicted RBP14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 CCL27Q9Y4X3 112 aa14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 PCDHGA9Q9Y5G4 932 aaKnown RBP14.89□□□□□ -0.03
CCDC28A-201ENST00000332797 MED13Q9UHV7 2174 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 SYNDIG1LA6NDD5 238 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 SAGE2PA6NJ88 616 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 WASHC1A8K0Z3 465 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 K7EM74 188 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 MYO1DO94832 1006 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 ANXA4P09525 319 aaPredicted RBP14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 ITGAMP11215 1152 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 ICAM2P13598 275 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 SLC26A5P58743 744 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 FOLH1Q04609 750 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 SERTAD2Q14140 314 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 EXT1Q16394 746 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 LACTB2Q53H82 288 aaPredicted RBP14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 PLAG1Q6DJT9 500 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 TRIM42Q8IWZ5 723 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 MMP21Q8N119 569 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 OR2T11Q8NH01 316 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 TM4SF18Q96CE8 201 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 SORT1Q99523 831 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 ILKAPQ9H0C8 392 aaPredicted RBP14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 LRTM1Q9HBL6 345 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 ADAP2Q9NPF8 381 aa14.88□□□□□ -0.03
CCDC28A-201ENST00000332797 RAP2CQ9Y3L5 183 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms