RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 SLAMF1Q13291 335 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 RCN2Q14257 317 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 ELAVL1Q15717 326 aaKnown RBP13.44□□□□□ -0.26
HMGN3-201ENST00000275036 C18orf63Q68DL7 685 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 GFRALQ6UXV0 394 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 C16orf47Q6ZP98 133 aaPredicted RBP13.44□□□□□ -0.26
HMGN3-201ENST00000275036 FJX1Q86VR8 437 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 ZNF321PQ8N8H1 164 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 MZB1Q8WU39 189 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 MTFMTQ96DP5 389 aaKnown RBP13.44□□□□□ -0.26
HMGN3-201ENST00000275036 VMP1Q96GC9 406 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 NTMT1Q9BV86 223 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 DEFB126Q9BYW3 111 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 SEMA4BQ9NPR2 832 aaPredicted RBP13.44□□□□□ -0.26
HMGN3-201ENST00000275036 TMEM216Q9P0N5 145 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 LRFN1Q9P244 771 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 VTI1BQ9UEU0 232 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 TMCO1Q9UM00 188 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 ATG4BQ9Y4P1 393 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 DNAJC13O75165 2243 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 ASPDHA6ND91 283 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 FOXE1O00358 373 aaPredicted RBP13.43□□□□□ -0.26
HMGN3-201ENST00000275036 TMPRSS11DO60235 418 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 ZG16O60844 167 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 IFNA16P05015 189 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 TSPAN8P19075 237 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 PTX3P26022 381 aaPredicted RBP13.43□□□□□ -0.26
HMGN3-201ENST00000275036 TRHRP34981 398 aaPredicted RBP13.43□□□□□ -0.26
HMGN3-201ENST00000275036 DCTP40126 519 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 CDH13P55290 713 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 STX4Q12846 297 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 CUL3Q13618 768 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 MRM1Q6IN84 353 aaKnown RBP13.43□□□□□ -0.26
HMGN3-201ENST00000275036 GALNTL5Q7Z4T8 443 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 OR4N5Q8IXE1 308 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 ZCCHC7Q8N3Z6 543 aaKnown RBP13.43□□□□□ -0.26
HMGN3-201ENST00000275036 DNAJB8Q8NHS0 232 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 ZNF483Q8TF39 744 aaPredicted RBP13.43□□□□□ -0.26
HMGN3-201ENST00000275036 SREK1Q8WXA9 508 aaKnown RBP13.43□□□□□ -0.26
HMGN3-201ENST00000275036 ATP6V1E2Q96A05 226 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 REPS1Q96D71 796 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 MTBPQ96DY7 904 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 FRMD6Q96NE9 622 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 TSPAN10Q9H1Z9 355 aaPredicted RBP13.43□□□□□ -0.26
HMGN3-201ENST00000275036 TRIM45Q9H8W5 580 aaPredicted RBP13.43□□□□□ -0.26
HMGN3-201ENST00000275036 LIN28AQ9H9Z2 209 aaKnown RBP13.43□□□□□ -0.26
HMGN3-201ENST00000275036 ZNF225Q9UK10 706 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 ASB4Q9Y574 426 aa13.43□□□□□ -0.26
HMGN3-201ENST00000275036 A0A0A6YYD5 115 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 WASHC1A8K0Z3 465 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 FOXO6A8MYZ6 492 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 GOLGA8RI6L899 631 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 ZNHIT1O43257 154 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 SLC25A12O75746 678 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 CRYABP02511 175 aaKnown RBP13.42□□□□□ -0.26
HMGN3-201ENST00000275036 GBAP04062 536 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 SP1P08047 785 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 CD46P15529 392 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 ARL1P40616 181 aaPredicted RBP13.42□□□□□ -0.26
HMGN3-201ENST00000275036 CYB561P49447 251 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 HLCSP50747 726 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 ARFIP1P53367 373 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 IGLV3-21P80748 117 aaPredicted RBP13.42□□□□□ -0.26
HMGN3-201ENST00000275036 TNFRSF17Q02223 184 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 RNFT1Q5M7Z0 435 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 LGSNQ5TDP6 509 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 FRG2Q64ET8 278 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 SLC25A25Q6KCM7 469 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 LETMD1Q6P1Q0 360 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 DGAT2L6Q6ZPD8 337 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 GPR180Q86V85 440 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 SIAH3Q8IW03 269 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 TMEM132CQ8N3T6 1108 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 OR4F6Q8NGB9 312 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 UCN3Q969E3 161 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 RELTQ969Z4 430 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 FRG2BQ96QU4 278 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 C1QTNF3Q9BXJ4 246 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 DDX31Q9H8H2 851 aaKnown RBP13.42□□□□□ -0.26
HMGN3-201ENST00000275036 PSD3Q9NYI0 1048 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 PSMC3IPQ9P2W1 217 aaPredicted RBP13.42□□□□□ -0.26
HMGN3-201ENST00000275036 SEC14L3Q9UDX4 400 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 FETUBQ9UGM5 382 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 TBK1Q9UHD2 729 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 PPT2Q9UMR5 302 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 CLCA3PQ9Y6N3 262 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 SPACA6W5XKT8 324 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 ITPR2Q14571 2701 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 CSMD1Q96PZ7 3565 aa13.42□□□□□ -0.26
HMGN3-201ENST00000275036 NOTCH2Q04721 2471 aa13.41□□□□□ -0.26
HMGN3-201ENST00000275036 CACNA1DQ01668 2161 aa13.41□□□□□ -0.26
HMGN3-201ENST00000275036 A0A1W2PR48 441 aa13.41□□□□□ -0.26
HMGN3-201ENST00000275036 C17orf105B2RV13 164 aa13.41□□□□□ -0.26
HMGN3-201ENST00000275036 PROM1O43490 865 aa13.41□□□□□ -0.26
HMGN3-201ENST00000275036 NME2P1O60361 137 aa13.41□□□□□ -0.26
HMGN3-201ENST00000275036 DLX3O60479 287 aa13.41□□□□□ -0.26
HMGN3-201ENST00000275036 ITGA10O75578 1167 aa13.41□□□□□ -0.26
HMGN3-201ENST00000275036 SHBGP04278 402 aa13.41□□□□□ -0.26
HMGN3-201ENST00000275036 NME2P22392 152 aa13.41□□□□□ -0.26
HMGN3-201ENST00000275036 PHEXP78562 749 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms