RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SLC25A31Q9H0C2 315 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 GPR33Q49SQ1 333 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 OR1S1Q8NH92 325 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 RSPRY1Q96DX4 576 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 AMBNQ9NP70 447 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 C2orf42Q9NWW7 574 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 ECI2O75521 394 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 TOXO94900 526 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 ZNF33AQ06730 810 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 HMGN3Q15651 99 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 MYLK3Q32MK0 819 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.43□□□□□ -0.266e-7■■□□□ 13.5
CCDC88A-201ENST00000263630 MRI1Q9BV20 369 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 OPA3Q9H6K4 179 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 PDGFRLQ15198 375 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 SGCAQ16586 387 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 SLC22A25Q6T423 547 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 OTOP3Q7RTS5 596 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 GLTPQ9NZD2 209 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 TRBV2A0A0J9YWF9 115 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 A0A1W2PS29 197 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 ADAM10O14672 748 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 TGFB1P01137 390 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 ADRB3P13945 408 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 COQ5Q5HYK3 327 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 PPM1JQ5JR12 505 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 REEP3Q6NUK4 255 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 DCUN1D4Q92564 292 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 SNX18Q96RF0 628 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 A0A1W2PPV4 95 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 FSCN2O14926 492 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 SYN3O14994 580 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 LCMT2O60294 686 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 KHDC1Q4VXA5 237 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 SAGE1Q9NXZ1 904 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 PIAS1O75925 651 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 FPR1P21462 350 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 ADRA1BP35368 520 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 PGAP1Q75T13 922 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 SLC51AQ86UW1 340 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 CHEK1O14757 476 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 CSF2P04141 144 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 VEGFAP15692 232 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 XRCC1P18887 633 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 GRM5P41594 1212 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 MAP2K5Q13163 448 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 GBX1Q14549 363 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 C6orf141Q5SZD1 244 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 CRTC1Q6UUV9 634 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 CXCL17Q6UXB2 119 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 ZNF630Q2M218 657 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 AGAP7PQ5VUJ5 663 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 AGAP6Q5VW22 663 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 TMEM126BQ8IUX1 230 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 AGAP4Q96P64 663 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 DPCDQ9BVM2 203 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 GOSR2O14653 212 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 EFNA1P20827 205 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 CAV2P51636 162 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 UBE2G2P60604 165 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 ZNF92Q03936 586 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 ERVK13-1Q9NX77 482 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 PCDHA2Q9Y5H9 948 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 GABRDO14764 452 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 AWAT2Q6E213 333 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 SGCZQ96LD1 299 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 HBEGFQ99075 208 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 MAFO75444 373 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 QPCTQ16769 361 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 SLC27A4Q6P1M0 643 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 CEACAM19Q7Z692 300 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 FUCA2Q9BTY2 467 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 METTL15P1P0C7V9 234 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 FUT4P22083 530 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 KCNC4Q03721 635 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 SF3B4Q15427 424 aaKnown RBP eCLIP13.42□□□□□ -0.261e-6■■■■□ 25.4
CCDC88A-201ENST00000263630 ELP2Q6IA86 826 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 FITM2Q8N6M3 262 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 HMCESQ96FZ2 354 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 GJD2Q9UKL4 321 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 ABCA9Q8IUA7 1624 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 K7EPK0 472 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 FAM155BO75949 473 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 METTL11BQ5VVY1 283 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 FAM71E2Q8N5Q1 922 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 FAM122AQ96E09 287 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 NDRG2Q9UN36 371 aaKnown RBP13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 EDNRBP24530 442 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 AK4P27144 223 aaPredicted RBP13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 RNASE10Q5GAN6 216 aaKnown RBP13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 SLC18B1Q6NT16 456 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 GTF2H5Q6ZYL4 71 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 SLC29A3Q9BZD2 475 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 LGALS13Q9UHV8 139 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 ZFR2Q9UPR6 939 aaKnown RBP13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 SLC22A14Q9Y267 594 aa13.42□□□□□ -0.26
CCDC88A-201ENST00000263630 IRAK2O43187 625 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 CFAP77Q6ZQR2 320 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 GPR152Q8TDT2 470 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms