RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 GSTT2P0CG29 244 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 CHRM1P11229 460 aaPredicted RBP18.39■□□□□ 0.53
UPF1-201ENST00000262803 GSTM2P28161 218 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 NFE2L1Q14494 772 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 ZC3H14Q6PJT7 736 aaKnown RBP18.39■□□□□ 0.53
UPF1-201ENST00000262803 LRRN1Q6UXK5 716 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 LRRC69Q6ZNQ3 347 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 ZNF689Q96CS4 500 aaPredicted RBP18.39■□□□□ 0.53
UPF1-201ENST00000262803 RAB9BQ9NP90 201 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 KLHL21Q9UJP4 597 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 LRRC37A3O60309 1634 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 HSPA12AO43301 675 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 HPRP00739 348 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 RABIFP47224 123 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 AKR1D1P51857 326 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 MOGQ16653 247 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 WSCD2Q2TBF2 565 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 ZNF613Q6PF04 617 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 SHKBP1Q8TBC3 707 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 ELP5Q8TE02 316 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 C12orf4Q9NQ89 552 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 RARRES3Q9UL19 164 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 MYH8P13535 1937 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 ATP6V1G1O75348 118 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 GRB7Q14451 532 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 SPIN3Q5JUX0 258 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 FAM129BQ96TA1 746 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 GNG8Q9UK08 70 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 ERP29P30040 261 aaKnown RBP18.38■□□□□ 0.53
UPF1-201ENST00000262803 TIA1P31483 386 aaKnown RBP eCLIP18.38■□□□□ 0.53
UPF1-201ENST00000262803 PLCXD2Q0VAA5 305 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 RPA4Q13156 261 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 GK3PQ14409 553 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 CDK10Q15131 360 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 ZNF852Q6ZMS4 543 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 TM9SF4Q92544 642 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 CREB3L1Q96BA8 519 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 ZNF224Q9NZL3 707 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 SOX1O00570 391 aaPredicted RBP18.38■□□□□ 0.53
UPF1-201ENST00000262803 MANEALQ5VSG8 457 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 SYCE2Q6PIF2 218 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 CYP8B1Q9UNU6 501 aa18.38■□□□□ 0.53
UPF1-201ENST00000262803 J3QLW9 94 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 KHNYNO15037 678 aaKnown RBP18.37■□□□□ 0.53
UPF1-201ENST00000262803 RAD51DO75771 328 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 ZNF19P17023 458 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 RAB28P51157 221 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 PGGT1BP53609 377 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 MAZP56270 477 aaKnown RBP18.37■□□□□ 0.53
UPF1-201ENST00000262803 HSD11B2P80365 405 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 PTGR1Q14914 329 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 ANKRD26P1Q6NSI1 321 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 NOXRED1Q6NXP6 359 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 SPAG16Q8N0X2 631 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 GOLM1Q8NBJ4 401 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 SLC45A3Q96JT2 553 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 TEPSINQ96N21 525 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 EVA1AQ9H8M9 152 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 ADAMTS6Q9UKP5 1117 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 COL2A1P02458 1487 aaPredicted RBP18.37■□□□□ 0.53
UPF1-201ENST00000262803 TLX2O43763 284 aaPredicted RBP18.37■□□□□ 0.53
UPF1-201ENST00000262803 LILRB3O75022 631 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 ZNF821O75541 412 aaPredicted RBP18.37■□□□□ 0.53
UPF1-201ENST00000262803 ATG12O94817 140 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 ASGR2P07307 311 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 GKP32189 559 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 LMAN2Q12907 356 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 MALLQ13021 153 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 ZNF829Q3KNS6 432 aaPredicted RBP18.37■□□□□ 0.53
UPF1-201ENST00000262803 TMEM225Q6GV28 225 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 LRRC25Q8N386 305 aaPredicted RBP18.37■□□□□ 0.53
UPF1-201ENST00000262803 NANOS1Q8WY41 292 aaKnown RBP18.37■□□□□ 0.53
UPF1-201ENST00000262803 MUS81Q96NY9 551 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 LSM1O15116 133 aaKnown RBP18.37■□□□□ 0.53
UPF1-201ENST00000262803 SOX14O95416 240 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 STATHP02808 62 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 ITGB1P05556 798 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 OR4D2P58180 307 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 SCAPQ12770 1279 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 CEACAM7Q14002 265 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 ZNF404Q494X3 552 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 UNC50Q53HI1 259 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 ZNF283Q8N7M2 679 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 KATNBL1Q9H079 304 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 SH3D21A4FU49 640 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 LASP1Q14847 261 aaKnown RBP18.37■□□□□ 0.53
UPF1-201ENST00000262803 STEAP4Q687X5 459 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 ZNF367Q7RTV3 350 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 GPRIN1Q7Z2K8 1008 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 HORMAD2Q8N7B1 307 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 HAVCR2Q8TDQ0 301 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 RELTQ969Z4 430 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 PTCHD1Q96NR3 888 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 RNF6Q9Y252 685 aa18.37■□□□□ 0.53
UPF1-201ENST00000262803 TEX13DA0A0J9YY54 714 aaPredicted RBP18.36■□□□□ 0.53
UPF1-201ENST00000262803 FLRT2O43155 660 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 S1PR4O95977 384 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 NTSR1P30989 418 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 ST3GAL4Q11206 333 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 MFSD13AQ14CX5 517 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms