RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 PQBP1O60828 265 aaKnown RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 LRATO95237 230 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 TNFP01375 233 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 CPN2P22792 545 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 FMO3P31513 532 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 OGDHQ02218 1023 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 TLE2Q04725 743 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 ZNF267Q14586 743 aaPredicted RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 EPGNQ6UW88 154 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 TMPPEQ6ZT21 453 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 ZNF781Q8N8C0 355 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 OR10G6Q8NH81 332 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 MTFMTQ96DP5 389 aaKnown RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 CNN2Q99439 309 aaKnown RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 DOCK5Q9H7D0 1870 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 COL2A1P02458 1487 aaPredicted RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 A0A1W2PRB8 838 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 C9IYK1 514 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 F6UZH7 168 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 RNASEH2AO75792 299 aaKnown RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 FABP1P07148 127 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 TRIM23P36406 574 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 LRRC66Q68CR7 880 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 AWAT2Q6E213 333 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 LGI4Q8N135 537 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 KCTD4Q8WVF5 259 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 WDR26Q9H7D7 661 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 CCSER2Q9H7U1 834 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PLEKHA3Q9HB20 300 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 SNTG1Q9NSN8 517 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 BLOC1S4Q9NUP1 217 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 DZANK1Q9NVP4 752 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 KLHL9Q9P2J3 617 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 ZNF536O15090 1300 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 AIPO00170 330 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 ZBTB7AO95365 584 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 HMGCS1Q01581 520 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 GBE1Q04446 702 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PEA15Q15121 130 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 UBAP2Q5T6F2 1119 aaKnown RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 RFWD3Q6PCD5 774 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 MTMR14Q8NCE2 650 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PTPRHQ9HD43 1115 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 GPR83Q9NYM4 423 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 SH2B3Q9UQQ2 575 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 TGM5O43548 720 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 HLA-HP01893 362 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 UBCP0CG48 685 aaKnown RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 RPL7AP62424 266 aaKnown RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 NAE1Q13564 534 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 KEAP1Q14145 624 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 KIAA1161Q6NSJ0 714 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 SLC18B1Q6NT16 456 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 CEACAM20Q6UY09 585 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 CATSPERGQ6ZRH7 1159 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 GAREM2Q75VX8 874 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 P4HA3Q7Z4N8 544 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 GNPDA2Q8TDQ7 276 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 SEC22CQ9BRL7 303 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 TNKS2Q9H2K2 1166 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PCDHB14Q9Y5E9 798 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 NUBP2Q9Y5Y2 271 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 hCG_1809904A0A1W2PP81 198 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 A0A1W2PPE2 198 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 A0A1W2PR64 198 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 A0A1W2PRV1 198 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 C2CD4BA6NLJ0 364 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 SHBGP04278 402 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 ATXN8OSP0DMR3 200 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 CORO1AP31146 461 aaKnown RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PSMA6P60900 246 aaKnown RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PCBD1P61457 104 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 GLO1Q04760 184 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PRAMEF14Q5SWL7 426 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PRAMEF13Q5VWM6 474 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 TPRA1Q86W33 373 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 CMASQ8NFW8 434 aaPredicted RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 ZNF436Q9C0F3 470 aaPredicted RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 FZD4Q9ULV1 537 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 DLEC1Q9Y238 1755 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 WNT10BO00744 389 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 TSPAN15O95858 294 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 RAB40ALP0C0E4 278 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 CCND3P30281 292 aaPredicted RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 CEBPGP53567 150 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 RPS3AP61247 264 aaKnown RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 LSM3P62310 102 aaKnown RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PTPRCAPQ14761 206 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 SMAD1Q15797 465 aaKnown RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 ANKDD1AQ495B1 522 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 RD3Q7Z3Z2 195 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 CELF5Q8N6W0 485 aaKnown RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 RAB40AQ8WXH6 277 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 ING5Q8WYH8 240 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PIGKQ92643 395 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 NUS1Q96E22 293 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 MYRFLQ96LU7 910 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PIP5K1AQ99755 562 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 EIF5A2Q9GZV4 153 aaKnown RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 WDR55Q9H6Y2 383 aaPredicted RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms