RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 F10P00742 488 aa18■□□□□ 0.47
CLN3-260ENST00000637578 PROCP04070 461 aa18■□□□□ 0.47
CLN3-260ENST00000637578 CERS1P27544 350 aa18■□□□□ 0.47
CLN3-260ENST00000637578 PIK3CBP42338 1070 aa18■□□□□ 0.47
CLN3-260ENST00000637578 DEPDC1Q5TB30 811 aa18■□□□□ 0.47
CLN3-260ENST00000637578 ZNF793Q6ZN11 406 aa18■□□□□ 0.47
CLN3-260ENST00000637578 CHSY3Q70JA7 882 aa18■□□□□ 0.47
CLN3-260ENST00000637578 EXOC3L1Q86VI1 746 aa18■□□□□ 0.47
CLN3-260ENST00000637578 SLC5A8Q8N695 610 aa18■□□□□ 0.47
CLN3-260ENST00000637578 PHF21BQ96EK2 531 aa18■□□□□ 0.47
CLN3-260ENST00000637578 CMTM7Q96FZ5 175 aa18■□□□□ 0.47
CLN3-260ENST00000637578 SLX1AQ9BQ83 275 aa18■□□□□ 0.47
CLN3-260ENST00000637578 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18■□□□□ 0.47
CLN3-260ENST00000637578 VIPAS39Q9H9C1 493 aa18■□□□□ 0.47
CLN3-260ENST00000637578 TMBIM4Q9HC24 238 aa18■□□□□ 0.47
CLN3-260ENST00000637578 PRTFDC1Q9NRG1 225 aa18■□□□□ 0.47
CLN3-260ENST00000637578 PCDHGB6Q9Y5F9 930 aa18■□□□□ 0.47
CLN3-260ENST00000637578 A8MT66 165 aa18■□□□□ 0.47
CLN3-260ENST00000637578 H0YIV9 168 aa18■□□□□ 0.47
CLN3-260ENST00000637578 CLDN4O14493 209 aa18■□□□□ 0.47
CLN3-260ENST00000637578 PRAMEF2O60811 474 aa18■□□□□ 0.47
CLN3-260ENST00000637578 SIX3O95343 332 aaPredicted RBP18■□□□□ 0.47
CLN3-260ENST00000637578 ATP5A1P25705 553 aaKnown RBP18■□□□□ 0.47
CLN3-260ENST00000637578 GTF2H2Q13888 395 aa18■□□□□ 0.47
CLN3-260ENST00000637578 CCDC153Q494R4 210 aa18■□□□□ 0.47
CLN3-260ENST00000637578 KHDRBS2Q5VWX1 349 aaKnown RBP18■□□□□ 0.47
CLN3-260ENST00000637578 GTF2H2CQ6P1K8 395 aa18■□□□□ 0.47
CLN3-260ENST00000637578 FAM180AQ6UWF9 173 aa18■□□□□ 0.47
CLN3-260ENST00000637578 GOLGA7Q7Z5G4 137 aa18■□□□□ 0.47
CLN3-260ENST00000637578 KIF2BQ8N4N8 673 aa18■□□□□ 0.47
CLN3-260ENST00000637578 ACOT4Q8N9L9 421 aa18■□□□□ 0.47
CLN3-260ENST00000637578 L3MBTL4Q8NA19 623 aa18■□□□□ 0.47
CLN3-260ENST00000637578 APCDD1LQ8NCL9 501 aa18■□□□□ 0.47
CLN3-260ENST00000637578 HUS1BQ8NHY5 278 aa18■□□□□ 0.47
CLN3-260ENST00000637578 CSF3RQ99062 836 aa18■□□□□ 0.47
CLN3-260ENST00000637578 COPS7BQ9H9Q2 264 aaPredicted RBP18■□□□□ 0.47
CLN3-260ENST00000637578 TMCO1Q9UM00 188 aa18■□□□□ 0.47
CLN3-260ENST00000637578 MRPS33Q9Y291 106 aaKnown RBP18■□□□□ 0.47
CLN3-260ENST00000637578 PLLPQ9Y342 182 aa18■□□□□ 0.47
CLN3-260ENST00000637578 ANGPTL3Q9Y5C1 460 aa18■□□□□ 0.47
CLN3-260ENST00000637578 PCDHGA11Q9Y5H2 935 aa18■□□□□ 0.47
CLN3-260ENST00000637578 DLX3O60479 287 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 SASH3O75995 380 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 TGFB1P01137 390 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 PCNAP12004 261 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 EDN3P14138 238 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 TAC1P20366 129 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 HIST1H1TP22492 207 aaPredicted RBP17.99■□□□□ 0.47
CLN3-260ENST00000637578 CD96P40200 585 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 PIK3CGP48736 1102 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 GPR143P51810 404 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 ARFIP1P53367 373 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 TAS2R50P59544 299 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 TUBA3CQ13748 450 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 RCN2Q14257 317 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 TUBA3EQ6PEY2 450 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 BCORP1Q8N888 145 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 FAM47BQ8NA70 645 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 MDS2Q8NDY4 140 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 PRR7Q8TB68 274 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 MAGEB10Q96LZ2 347 aaPredicted RBP17.99■□□□□ 0.47
CLN3-260ENST00000637578 IQCGQ9H095 443 aaKnown RBP17.99■□□□□ 0.47
CLN3-260ENST00000637578 STMN4Q9H169 189 aaPredicted RBP17.99■□□□□ 0.47
CLN3-260ENST00000637578 IPPKQ9H8X2 491 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 ACTR8Q9H981 624 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 PSD3Q9NYI0 1048 aa17.99■□□□□ 0.47
CLN3-260ENST00000637578 HIVEP3Q5T1R4 2406 aa17.98■□□□□ 0.47
CLN3-260ENST00000637578 USP9YO00507 2555 aaPredicted RBP17.98■□□□□ 0.47
CLN3-260ENST00000637578 SYNDIG1LA6NDD5 238 aa17.98■□□□□ 0.47
CLN3-260ENST00000637578 G3V2L1 256 aa17.98■□□□□ 0.47
CLN3-260ENST00000637578 STX16-NPEPL1H3BU86 382 aa17.98■□□□□ 0.47
CLN3-260ENST00000637578 STX16O14662 325 aa17.98■□□□□ 0.47
CLN3-260ENST00000637578 TYROBPO43914 113 aa17.98■□□□□ 0.47
CLN3-260ENST00000637578 CTNSO60931 367 aa17.98■□□□□ 0.47
CLN3-260ENST00000637578 EEF1DP29692 281 aaKnown RBP17.98■□□□□ 0.47
CLN3-260ENST00000637578 RPS19BP1Q86WX3 136 aaKnown RBP17.98■□□□□ 0.47
CLN3-260ENST00000637578 B3GNT7Q8NFL0 401 aa17.98■□□□□ 0.47
CLN3-260ENST00000637578 MAPKAP1Q9BPZ7 522 aa17.98■□□□□ 0.47
CLN3-260ENST00000637578 OR51B5Q9H339 312 aa17.98■□□□□ 0.47
CLN3-260ENST00000637578 DMRT3Q9NQL9 472 aa17.98■□□□□ 0.47
CLN3-260ENST00000637578 ZNF446Q9NWS9 450 aa17.98■□□□□ 0.47
CLN3-260ENST00000637578 ABI3Q9P2A4 366 aa17.98■□□□□ 0.47
CLN3-260ENST00000637578 SLC17A7Q9P2U7 560 aa17.98■□□□□ 0.47
CLN3-260ENST00000637578 ACTL7BQ9Y614 415 aa17.98■□□□□ 0.47
CLN3-260ENST00000637578 WIPF3A6NGB9 483 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 RTCAO00442 366 aaKnown RBP17.97■□□□□ 0.47
CLN3-260ENST00000637578 OR7A17O14581 309 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 AGFG2O95081 481 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 ATP5F1P24539 256 aaPredicted RBP17.97■□□□□ 0.47
CLN3-260ENST00000637578 SLC13A2Q13183 592 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 AP5B1Q2VPB7 878 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 OR4C11Q6IEV9 310 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 ZYG11AQ6WRX3 759 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 CCDC63Q8NA47 563 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 SUN3Q8TAQ9 357 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 WDR20Q8TBZ3 569 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 TCP10LQ8TDR4 215 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 TLCD1Q96CP7 247 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 SIGLEC12Q96PQ1 595 aa17.97■□□□□ 0.47
CLN3-260ENST00000637578 FAM111AQ96PZ2 611 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms