RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CHAF1BQ13112 559 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 TTMPQ5BVD1 217 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 SH2D4BQ5SQS7 431 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 TCTN3Q6NUS6 607 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 AGR3Q8TD06 166 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 SH3GL2Q99962 352 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 MAPKAP1Q9BPZ7 522 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 ACPTQ9BZG2 426 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 TNFRSF12AQ9NP84 129 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 LANCL2Q9NS86 450 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 LYARQ9NX58 379 aaKnown RBP17.02■□□□□ 0.32
CLN3-239ENST00000628023 PHF11Q9UIL8 331 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 FBXL4Q9UKA2 621 aa17.02■□□□□ 0.32
CLN3-239ENST00000628023 OR2W5A6NFC9 320 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 HMGB1P1B2RPK0 211 aaPredicted RBP17.01■□□□□ 0.31
CLN3-239ENST00000628023 TMEM114B3SHH9 223 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 CLDN4O14493 209 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 PRMT3O60678 531 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 EEDO75530 441 aaKnown RBP17.01■□□□□ 0.31
CLN3-239ENST00000628023 KLK1P06870 262 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 CPN2P22792 545 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 BSGP35613 385 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 HMGCS1Q01581 520 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 RHAGQ02094 409 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 GALNT1Q10472 559 aaPredicted RBP17.01■□□□□ 0.31
CLN3-239ENST00000628023 NSDHLQ15738 373 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 SPDYAQ5MJ70 313 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 CPZQ66K79 652 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 KIRREL2Q6UWL6 708 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 QSOX2Q6ZRP7 698 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 MED25Q71SY5 747 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 COMMD6Q7Z4G1 85 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 METTL4Q8N3J2 472 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 TMEM102Q8N9M5 508 aaPredicted RBP17.01■□□□□ 0.31
CLN3-239ENST00000628023 TEX19Q8NA77 164 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 CLEC1AQ8NC01 280 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 TSLPQ969D9 159 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 PTCHD1Q96NR3 888 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 CSF3RQ99062 836 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 ZNF717Q9BY31 904 aaPredicted RBP17.01■□□□□ 0.31
CLN3-239ENST00000628023 ING2Q9H160 280 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 DDX31Q9H8H2 851 aaKnown RBP17.01■□□□□ 0.31
CLN3-239ENST00000628023 PRTFDC1Q9NRG1 225 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 MS4A12Q9NXJ0 267 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 TP53TG5Q9Y2B4 290 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 NUP210LQ5VU65 1888 aa17.01■□□□□ 0.31
CLN3-239ENST00000628023 NBASA2RRP1 2371 aa17■□□□□ 0.31
CLN3-239ENST00000628023 A0A0A6YYD5 115 aa17■□□□□ 0.31
CLN3-239ENST00000628023 GBAP04062 536 aa17■□□□□ 0.31
CLN3-239ENST00000628023 MAOAP21397 527 aa17■□□□□ 0.31
CLN3-239ENST00000628023 GRK2P25098 689 aa17■□□□□ 0.31
CLN3-239ENST00000628023 BUD31P41223 144 aaPredicted RBP17■□□□□ 0.31
CLN3-239ENST00000628023 ABCE1P61221 599 aaKnown RBP17■□□□□ 0.31
CLN3-239ENST00000628023 FOXK1P85037 733 aa17■□□□□ 0.31
CLN3-239ENST00000628023 BTKQ06187 659 aa17■□□□□ 0.31
CLN3-239ENST00000628023 SLC13A2Q13183 592 aa17■□□□□ 0.31
CLN3-239ENST00000628023 CCNYL2Q5T2Q4 361 aa17■□□□□ 0.31
CLN3-239ENST00000628023 KANK2Q63ZY3 851 aa17■□□□□ 0.31
CLN3-239ENST00000628023 LANCL3Q6ZV70 420 aa17■□□□□ 0.31
CLN3-239ENST00000628023 GPR180Q86V85 440 aa17■□□□□ 0.31
CLN3-239ENST00000628023 HOMEZQ8IX15 550 aa17■□□□□ 0.31
CLN3-239ENST00000628023 ZNF595Q8IYB9 648 aa17■□□□□ 0.31
CLN3-239ENST00000628023 C1orf52Q8N6N3 182 aaKnown RBP17■□□□□ 0.31
CLN3-239ENST00000628023 OR11G2Q8NGC1 345 aa17■□□□□ 0.31
CLN3-239ENST00000628023 PRDM9Q9NQV7 894 aa17■□□□□ 0.31
CLN3-239ENST00000628023 MMACHCQ9Y4U1 282 aa17■□□□□ 0.31
CLN3-239ENST00000628023 MAST4O15021 2626 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 NSG1A0A0A6YYJ2 146 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 TMEM233B4DJY2 109 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 TMPRSS11DO60235 418 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 LYPLA1O75608 230 aaPredicted RBP16.99■□□□□ 0.31
CLN3-239ENST00000628023 DNAJB5O75953 348 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 FAM58BPP0C7Q3 252 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 CHN1P15882 459 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 TLX1P31314 330 aaPredicted RBP16.99■□□□□ 0.31
CLN3-239ENST00000628023 EFNA3P52797 238 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 MAPK12P53778 367 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 HNRNPH2P55795 449 aaKnown RBP16.99■□□□□ 0.31
CLN3-239ENST00000628023 WDR4P57081 412 aaKnown RBP16.99■□□□□ 0.31
CLN3-239ENST00000628023 BTG2P78543 158 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 TNFRSF17Q02223 184 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 ACTN3Q08043 901 aaPredicted RBP16.99■□□□□ 0.31
CLN3-239ENST00000628023 ACSM2AQ08AH3 577 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 STX3Q13277 289 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 SPIN4Q56A73 249 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 COLEC12Q5KU26 742 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 DCAF10Q5QP82 559 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 ACSM2BQ68CK6 577 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 TMEM205Q6UW68 189 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 ASB18Q6ZVZ8 466 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 ANKRD37Q7Z713 158 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 CLNKQ7Z7G1 428 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 DDIASQ8IXT1 998 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 CLYBLQ8N0X4 340 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 PLPP5Q8NEB5 264 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 MESP1Q9BRJ9 268 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 WDR41Q9HAD4 459 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 RIC8BQ9NVN3 520 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 KCMF1Q9P0J7 381 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 ADAM29Q9UKF5 820 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms