RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-218	ENST00000625299	TNNI3	P19429	210 aa		13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	PIGA	P37287	484 aa		13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	PGGT1B	P53609	377 aa		13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	WNT3	P56703	355 aa		13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	STXBP1	P61764	594 aa	Known RBP	13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	FOXO1	Q12778	655 aa		13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	PDAP1	Q13442	181 aa	Known RBP	13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	HSPB2	Q16082	182 aa		13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	NXPE4	Q6UWF7	544 aa		13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	CHSY3	Q70JA7	882 aa		13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	THOC6	Q86W42	341 aa	Known RBP	13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	TMEM139	Q8IV31	216 aa		13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	ZNF321P	Q8N8H1	164 aa		13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	GOLM1	Q8NBJ4	401 aa		13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	MAIP1	Q8WWC4	291 aa		13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	CSF3R	Q99062	836 aa		13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	SH3GL2	Q99962	352 aa		13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	ZNF395	Q9H8N7	513 aa	Predicted RBP	13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	XAB2	Q9HCS7	855 aa	Known RBP	13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	ATG4B	Q9Y4P1	393 aa		13.57	□□□□□ -0.24
PNKP-218	ENST00000625299	FN1	P02751	2386 aa	Known RBP	13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	HCN1	O60741	890 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	ZNF354A	O60765	605 aa	Predicted RBP	13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	KRT14	P02533	472 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	MLN	P12872	115 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	HNRNPH1	P31943	449 aa	Known RBP	13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	MAGEA6	P43360	314 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	IL2	P60568	153 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	KCNJ2	P63252	427 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	RNF4	P78317	190 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	STX4	Q12846	297 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	PCBP2	Q15366	365 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	OPN5	Q6U736	354 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	SEM1	Q6ZVN7	128 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	ULK2	Q8IYT8	1036 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	AGGF1	Q8N302	714 aa	eCLIP	13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	LIX1	Q8N485	282 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	C2CD4A	Q8NCU7	369 aa	Predicted RBP	13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	NAXE	Q8NCW5	288 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	OR14A16	Q8NHC5	309 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	NUDT8	Q8WV74	236 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	DAZL	Q92904	295 aa	Known RBP	13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	SGCZ	Q96LD1	299 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	RUNDC3B	Q96NL0	473 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	NPL	Q9BXD5	320 aa	Predicted RBP	13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	SLC6A15	Q9H2J7	730 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	NEUROD4	Q9HD90	331 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	HOMER3	Q9NSC5	361 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	MTRF1L	Q9UGC7	380 aa	Known RBP	13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	SLC22A14	Q9Y267	594 aa		13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	13.56	□□□□□ -0.24
PNKP-218	ENST00000625299	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	13.55	□□□□□ -0.24
PNKP-218	ENST00000625299		A0A088AWK7	358 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	TUBAL3	A6NHL2	446 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	C17orf105	B2RV13	164 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	ZNF10	P21506	573 aa	Predicted RBP	13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	CERS1	P27544	350 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	TRPC1	P48995	793 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	PLA2G16	P53816	162 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	HYAL4	Q2M3T9	481 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	PRAMEF20	Q5VT98	475 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	ZNF595	Q8IYB9	648 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	KLHDC8A	Q8IYD2	350 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	FBXW8	Q8N3Y1	598 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	GPATCH11	Q8N954	259 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	MORN4	Q8NDC4	146 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	TNIP2	Q8NFZ5	429 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	OR5L2	Q8NGL0	311 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	LINC01560	Q8TB33	94 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	PTPMT1	Q8WUK0	201 aa	Predicted RBP	13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	JSRP1	Q96MG2	331 aa	Predicted RBP	13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	ALOXE3	Q9BYJ1	711 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	COPS7B	Q9H9Q2	264 aa	Predicted RBP	13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	SLC17A6	Q9P2U8	582 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	KCNE2	Q9Y6J6	123 aa		13.55	□□□□□ -0.24
PNKP-218	ENST00000625299	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	KDM4E	B2RXH2	506 aa	Predicted RBP	13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	HEXA	P06865	529 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	ENO2	P09104	434 aa	Predicted RBP	13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	RFPL3S	P0C7P2	107 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	GABRB3	P28472	473 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	HOXC12	P31275	282 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	DCAF7	P61962	342 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	ASPH	Q12797	758 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	DAZAP2	Q15038	168 aa	Predicted RBP	13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	POU4F3	Q15319	338 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	BBS9	Q3SYG4	887 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	VWA5B2	Q8N398	1253 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	LRRN4CL	Q8ND94	238 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	MCU	Q8NE86	351 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	SLC2A12	Q8TD20	617 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	KIAA1191	Q96A73	305 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	MS4A6E	Q96DS6	147 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	MDFI	Q99750	246 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	EGFL8	Q99944	293 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	YIPF4	Q9BSR8	244 aa		13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	REPIN1	Q9BWE0	567 aa	Known RBP	13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	ZNF703	Q9H7S9	590 aa	Predicted RBP	13.54	□□□□□ -0.24
PNKP-218	ENST00000625299	PRM3	Q9NNZ6	103 aa		13.54	□□□□□ -0.24

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