RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 PPP1R36Q96LQ0 422 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 EFHD1Q9BUP0 239 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 YIPF2Q9BWQ6 316 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 EBPLQ9BY08 206 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 ACTL8Q9H568 366 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 TEX10Q9NXF1 929 aaPredicted RBP18.58■□□□□ 0.56
UPF3A-211ENST00000618700 MS4A12Q9NXJ0 267 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 FBXW2Q9UKT8 454 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 PADI2Q9Y2J8 665 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 RAXQ9Y2V3 346 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 ATG4BQ9Y4P1 393 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 POLR3HQ9Y535 204 aaPredicted RBP18.58■□□□□ 0.56
UPF3A-211ENST00000618700 ZFHX4Q86UP3 3567 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 FAM227AF5H4B4 570 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 PSMD12O00232 456 aaPredicted RBP18.57■□□□□ 0.56
UPF3A-211ENST00000618700 TAF4O00268 1085 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 KLK10O43240 276 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 PEX11AO75192 247 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 VPS4BO75351 444 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 UMODP07911 640 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 ACPPP15309 386 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 HNRNPFP52597 415 aaKnown RBP18.57■□□□□ 0.56
UPF3A-211ENST00000618700 GYS2P54840 703 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 RPL38P63173 70 aaKnown RBP18.57■□□□□ 0.56
UPF3A-211ENST00000618700 TNFRSF17Q02223 184 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 KLC1Q07866 573 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 SMU1Q2TAY7 513 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 TUBB8Q3ZCM7 444 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 VWA5B1Q5TIE3 1220 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 FAM69BQ5VUD6 431 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 LARP4Q71RC2 724 aaKnown RBP eCLIP18.57■□□□□ 0.56
UPF3A-211ENST00000618700 SPACA3Q8IXA5 215 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 TMEM52Q8NDY8 209 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 ZNF317Q96PQ6 595 aaPredicted RBP18.57■□□□□ 0.56
UPF3A-211ENST00000618700 SOX17Q9H6I2 414 aaPredicted RBP18.57■□□□□ 0.56
UPF3A-211ENST00000618700 AKTIPQ9H8T0 292 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 DLGAP4Q9Y2H0 992 aa18.57■□□□□ 0.56
UPF3A-211ENST00000618700 PTRH2Q9Y3E5 179 aaKnown RBP18.57■□□□□ 0.56
UPF3A-211ENST00000618700 MRPS18BQ9Y676 258 aaKnown RBP18.57■□□□□ 0.56
UPF3A-211ENST00000618700 ANKRD11Q6UB99 2663 aaPredicted RBP18.57■□□□□ 0.56
UPF3A-211ENST00000618700 A0A1W2PR48 441 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 PROM1O43490 865 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 TGDSO95455 350 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 CYC1P08574 325 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 ANXA4P09525 319 aaPredicted RBP18.56■□□□□ 0.56
UPF3A-211ENST00000618700 WT1P19544 449 aaPredicted RBP18.56■□□□□ 0.56
UPF3A-211ENST00000618700 JAK1P23458 1154 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 EPHA3P29320 983 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 FOLR3P41439 243 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 GSTM5P46439 218 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 ZNF763Q0D2J5 394 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 ERV3-1Q14264 604 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 SLC9B1Q4ZJI4 515 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 EPGNQ6UW88 154 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 SHISA6Q6ZSJ9 500 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 LAPTM4BQ86VI4 370 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 PRSS58Q8IYP2 241 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.56■□□□□ 0.56
UPF3A-211ENST00000618700 TM4SF18Q96CE8 201 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 SLC45A3Q96JT2 553 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 VN1R1Q9GZP7 353 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 FGFR1OP2Q9NVK5 253 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 ZMIZ1Q9ULJ6 1067 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 SPACA6W5XKT8 324 aa18.56■□□□□ 0.56
UPF3A-211ENST00000618700 GNG14A0A1W2PPG7 69 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 BLACEA4D250 179 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 IDSB3KWA1 339 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 RRP8O43159 456 aaKnown RBP18.55■□□□□ 0.56
UPF3A-211ENST00000618700 CDC123O75794 336 aaPredicted RBP18.55■□□□□ 0.56
UPF3A-211ENST00000618700 MYO1DO94832 1006 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 AIFM1O95831 613 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 RECKO95980 971 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 VIMP08670 466 aaKnown RBP18.55■□□□□ 0.56
UPF3A-211ENST00000618700 NR2F6P10588 404 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 SDC1P18827 310 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 CPN2P22792 545 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 BUD31P41223 144 aaPredicted RBP18.55■□□□□ 0.56
UPF3A-211ENST00000618700 RHAGQ02094 409 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 NDUFAF5Q5TEU4 345 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 C18orf63Q68DL7 685 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 OGFOD2Q6N063 350 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 CGB2Q6NT52 195 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 QSOX2Q6ZRP7 698 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 PACS2Q86VP3 889 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 SCUBE1Q8IWY4 988 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 ZNF595Q8IYB9 648 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 FNDC5Q8NAU1 212 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 ACTRT2Q8TDY3 377 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 C16orf78Q8WTQ4 265 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 STON2Q8WXE9 905 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 STARD8Q92502 1023 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 CCNL2Q96S94 520 aaPredicted RBP18.55■□□□□ 0.56
UPF3A-211ENST00000618700 CRB3Q9BUF7 120 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 WDR55Q9H6Y2 383 aaPredicted RBP18.55■□□□□ 0.56
UPF3A-211ENST00000618700 MYNNQ9NPC7 610 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 ASIC5Q9NY37 505 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 C3orf18Q9UK00 162 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 MKL2Q9ULH7 1088 aa18.55■□□□□ 0.56
UPF3A-211ENST00000618700 MRPS33Q9Y291 106 aaKnown RBP18.55■□□□□ 0.56
UPF3A-211ENST00000618700 MMACHCQ9Y4U1 282 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms