RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 CHTF18Q8WVB6 975 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 UBL7Q96S82 380 aaPredicted RBP15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 LYARQ9NX58 379 aaKnown RBP15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 MS4A12Q9NXJ0 267 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 C19orf25Q9UFG5 118 aaPredicted RBP15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 PHF11Q9UIL8 331 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 FIS1Q9Y3D6 152 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 TRAF6Q9Y4K3 522 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 ATG4BQ9Y4P1 393 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 MMACHCQ9Y4U1 282 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 ASB4Q9Y574 426 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 DNAJC15Q9Y5T4 150 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 SPACA6W5XKT8 324 aa15.55■□□□□ 0.08
CCDC28A-202ENST00000611852 TMEM114B3SHH9 223 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 TMEM233B4DJY2 109 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 CLDN4O14493 209 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 ITM2AO43736 263 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 LYPLA1O75608 230 aaPredicted RBP15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 FAM58BPP0C7Q3 252 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 FAM87AP0C7U9 286 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 CPN2P22792 545 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 GRK2P25098 689 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 PCOLCEQ15113 449 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 UGT3A2Q3SY77 523 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 SH2D4BQ5SQS7 431 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 NDUFAF7Q7L592 441 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 CPEB2Q7Z5Q1 589 aaKnown RBP15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 SCUBE1Q8IWY4 988 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 CLYBLQ8N0X4 340 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 C1orf52Q8N6N3 182 aaKnown RBP15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 EFCAB3Q8N7B9 438 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 CLEC1AQ8NC01 280 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 AGR3Q8TD06 166 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 WBP1Q96G27 269 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 ZNF700Q9H0M5 742 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 NECTIN3Q9NQS3 549 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 PRTFDC1Q9NRG1 225 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 CLDN16Q9Y5I7 305 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 IGSF10Q6WRI0 2623 aa15.54■□□□□ 0.08
CCDC28A-202ENST00000611852 PIEZO2Q9H5I5 2752 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 NSG1A0A0A6YYJ2 146 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 IGHV3-20A0A0C4DH32 117 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 TCRBV16S1A1N1A0A5B0 115 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 HMGB1P1B2RPK0 211 aaPredicted RBP15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 PROM1O43490 865 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 CTNSO60931 367 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 CHEK2O96017 543 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 HPP00738 406 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 NEFHP12036 1026 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 CCL11P51671 97 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 ABCE1P61221 599 aaKnown RBP15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 TNFRSF17Q02223 184 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 AIMP2Q13155 320 aaKnown RBP15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 SLC13A2Q13183 592 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 CCNYL2Q5T2Q4 361 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 C18orf63Q68DL7 685 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 RNF165Q6ZSG1 346 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 HOMEZQ8IX15 550 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 EXD3Q8N9H8 876 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 C11orf24Q96F05 449 aaPredicted RBP15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 APIPQ96GX9 242 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 C20orf27Q9GZN8 174 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 TUBB1Q9H4B7 451 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 ZNF395Q9H8N7 513 aaPredicted RBP15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 ZNF160Q9HCG1 818 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 ATP13A2Q9NQ11 1180 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 ZDHHC2Q9UIJ5 367 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 CCL27Q9Y4X3 112 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 PTGDR2Q9Y5Y4 395 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 CHD6Q8TD26 2715 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 A0A1W2PR48 441 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 ARHGAP10A1A4S6 786 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 BLACEA4D250 179 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 TGFBR3LH3BV60 316 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 CEACAM4O75871 244 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 HSPA4LO95757 839 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 BUD31P41223 144 aaPredicted RBP15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 ACSM2AQ08AH3 577 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 Q0VFX4 171 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 IMPG1Q17R60 797 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 SPIN4Q56A73 249 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 SFT2D3Q587I9 215 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 HSP90B2PQ58FF3 399 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 ACSM2BQ68CK6 577 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 CLNKQ7Z7G1 428 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 WDR77Q9BQA1 342 aaPredicted RBP15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 ADNPQ9H2P0 1102 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 RPF2Q9H7B2 306 aaKnown RBP15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 RIC8BQ9NVN3 520 aa15.53■□□□□ 0.08
CCDC28A-202ENST00000611852 FAM208BQ5VWN6 2430 aa15.52■□□□□ 0.08
CCDC28A-202ENST00000611852 ATXN7O15265 892 aaPredicted RBP15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 PRKRAO75569 313 aaKnown RBP15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 RSL1D1O76021 490 aaKnown RBP15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 SEC24DO94855 1032 aaPredicted RBP15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 TLX1P31314 330 aaPredicted RBP15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 SLC1A6P48664 564 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 MAPK12P53778 367 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 SOX8P57073 446 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 OR4D2P58180 307 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 RAE1P78406 368 aaKnown RBP15.52■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms