RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SCP2D1Q9UJQ7 156 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 FABP12A6NFH5 140 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 RPP14O95059 124 aaKnown RBP19.67■□□□□ 0.74
UPF1-207ENST00000599848 GJB5O95377 273 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 ATP4BP51164 291 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 PTPRCAPQ14761 206 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 ARMC5Q96C12 935 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 MROQ9BYG7 248 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 PLAGL1Q9UM63 463 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 EIF1AYO14602 144 aaKnown RBP19.67■□□□□ 0.74
UPF1-207ENST00000599848 AHCYL1O43865 530 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 SRCP12931 536 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 CD46P15529 392 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 ZNF782Q6ZMW2 699 aaPredicted RBP19.67■□□□□ 0.74
UPF1-207ENST00000599848 MAMDC2Q7Z304 686 aaPredicted RBP19.67■□□□□ 0.74
UPF1-207ENST00000599848 ZSWIM9Q86XI8 627 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 C2CD4AQ8NCU7 369 aaPredicted RBP19.67■□□□□ 0.74
UPF1-207ENST00000599848 FANK1Q8TC84 345 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 C22orf15Q8WYQ4 148 aa19.67■□□□□ 0.74
UPF1-207ENST00000599848 HOXB13Q92826 284 aaPredicted RBP19.67■□□□□ 0.74
UPF1-207ENST00000599848 hCG_1807616A0A1W2PRN6 198 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 M0R2N6 131 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 C8orf89P0DMQ9 161 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 SLC6A8P48029 635 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 SLC18A2Q05940 514 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 AKAP14Q86UN6 197 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 NUP43Q8NFH3 380 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 LRRC58Q96CX6 371 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 FOXD2O60548 495 aaPredicted RBP19.66■□□□□ 0.74
UPF1-207ENST00000599848 RBM44Q6ZP01 1051 aaKnown RBP19.66■□□□□ 0.74
UPF1-207ENST00000599848 DENND6BQ8NEG7 585 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 AGAP11Q8TF27 550 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 ERMAPQ96PL5 475 aaPredicted RBP19.66■□□□□ 0.74
UPF1-207ENST00000599848 ZFYVE21Q9BQ24 234 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 GGT3PA6NGU5 568 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 EPHA4P54764 986 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 EMP2P54851 167 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 CLCA4Q14CN2 919 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 ACVR1CQ8NER5 493 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 ZFP3Q96NJ6 502 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 ZNF559Q9BR84 538 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 PITHD1Q9GZP4 211 aaPredicted RBP19.66■□□□□ 0.74
UPF1-207ENST00000599848 RPF2Q9H7B2 306 aaKnown RBP19.66■□□□□ 0.74
UPF1-207ENST00000599848 HSFX1Q9UBD0 423 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 TRIM64BA6NI03 449 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 CD3GP09693 182 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 ABOP16442 354 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 TUBA3CQ13748 450 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 NFE2L1Q14494 772 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 CLDN19Q8N6F1 224 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 OR8S1Q8NH09 359 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 FAM129BQ96TA1 746 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 PAK1IP1Q9NWT1 392 aaPredicted RBP19.66■□□□□ 0.74
UPF1-207ENST00000599848 TUBA8Q9NY65 449 aaPredicted RBP19.66■□□□□ 0.74
UPF1-207ENST00000599848 EMC3Q9P0I2 261 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 C6orf47O95873 294 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 TIA1P31483 386 aaKnown RBP eCLIP19.66■□□□□ 0.74
UPF1-207ENST00000599848 TWNKQ96RR1 684 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 AKTIPQ9H8T0 292 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 GALPQ9UBC7 116 aa19.66■□□□□ 0.74
UPF1-207ENST00000599848 EDNRBP24530 442 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 DNAJB13P59910 316 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 SUSD1Q6UWL2 747 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 SSX6Q7RTT6 188 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 METTL27Q8N6F8 245 aaPredicted RBP19.65■□□□□ 0.74
UPF1-207ENST00000599848 SFXN2Q96NB2 322 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 ALPK1Q96QP1 1244 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 TTYH2Q9BSA4 534 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 NOP16Q9Y3C1 178 aaKnown RBP19.65■□□□□ 0.74
UPF1-207ENST00000599848 LOC102723532A0A0G2JNH3 316 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 ZNF99A8MXY4 864 aaPredicted RBP19.65■□□□□ 0.74
UPF1-207ENST00000599848 CD6P30203 668 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 CYP27C1Q4G0S4 372 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 DEFB134Q4QY38 66 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 C4orf46Q504U0 113 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 LAS2Q8IYD9 372 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 PSD4Q8NDX1 1056 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 CDK15Q96Q40 435 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 ZNF821O75541 412 aaPredicted RBP19.65■□□□□ 0.74
UPF1-207ENST00000599848 KIR2DS3Q14952 304 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 MORN1Q5T089 497 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 LCTLQ6UWM7 567 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 PAPD5Q8NDF8 572 aaKnown RBP19.65■□□□□ 0.74
UPF1-207ENST00000599848 TBX5Q99593 518 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 KLHL21Q9UJP4 597 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 GNG8Q9UK08 70 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 PCDHB10Q9UN67 800 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 DIRAS3O95661 229 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 GSTT1P30711 240 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 PTGIRP43119 386 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 TMBIM6P55061 237 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 SLAMF1Q13291 335 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 ZNF829Q3KNS6 432 aaPredicted RBP19.65■□□□□ 0.74
UPF1-207ENST00000599848 OR5T2Q8NGG2 359 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 SGTBQ96EQ0 304 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 S100A16Q96FQ6 103 aaKnown RBP19.65■□□□□ 0.74
UPF1-207ENST00000599848 IMP4Q96G21 291 aaKnown RBP19.65■□□□□ 0.74
UPF1-207ENST00000599848 PRR11Q96HE9 360 aaPredicted RBP19.65■□□□□ 0.74
UPF1-207ENST00000599848 CCDC115Q96NT0 180 aa19.65■□□□□ 0.74
UPF1-207ENST00000599848 XKR8Q9H6D3 395 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms