RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SOX30O94993 753 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 UGT2B7P16662 529 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 IDH2P48735 452 aaKnown RBP9.4□□□□□ -0.9
LIG3-216ENST00000593099 DIO3P55073 304 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 CEACAM20Q6UY09 585 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 IQCHQ86VS3 1027 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 TEX47Q8TBZ9 253 aa9.4□□□□□ -0.9
LIG3-216ENST00000593099 TLCD2A6NGC4 264 aa9.4□□□□□ -0.91
LIG3-216ENST00000593099 RPS17P08708 135 aaKnown RBP9.4□□□□□ -0.91
LIG3-216ENST00000593099 ATP4BP51164 291 aa9.4□□□□□ -0.91
LIG3-216ENST00000593099 ACVR1Q04771 509 aa9.4□□□□□ -0.91
LIG3-216ENST00000593099 MPP2Q14168 576 aa9.4□□□□□ -0.91
LIG3-216ENST00000593099 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.4□□□□□ -0.91
LIG3-216ENST00000593099 DEPDC1Q5TB30 811 aa9.4□□□□□ -0.91
LIG3-216ENST00000593099 ANKRD26P1Q6NSI1 321 aa9.4□□□□□ -0.91
LIG3-216ENST00000593099 IYDQ6PHW0 289 aa9.4□□□□□ -0.91
LIG3-216ENST00000593099 BNIPLQ7Z465 357 aa9.4□□□□□ -0.91
LIG3-216ENST00000593099 COMMD6Q7Z4G1 85 aa9.4□□□□□ -0.91
LIG3-216ENST00000593099 VN1R5Q7Z5H4 357 aa9.4□□□□□ -0.91
LIG3-216ENST00000593099 ATOH8Q96SQ7 321 aa9.4□□□□□ -0.91
LIG3-216ENST00000593099 C19orf43Q9BQ61 176 aa9.4□□□□□ -0.91
LIG3-216ENST00000593099 S1PR5Q9H228 398 aa9.4□□□□□ -0.91
LIG3-216ENST00000593099 PTGES2Q9H7Z7 377 aa9.4□□□□□ -0.91
LIG3-216ENST00000593099 K7EQS6 105 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 YY2O15391 372 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 GSC2O15499 205 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 COL9A1P20849 921 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 GABRB3P28472 473 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 PRDX3P30048 256 aaKnown RBP9.39□□□□□ -0.91
LIG3-216ENST00000593099 GSTM5P46439 218 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 EEFSECP57772 596 aaKnown RBP9.39□□□□□ -0.91
LIG3-216ENST00000593099 SH3BP2P78314 561 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 HSD11B2P80365 405 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 C1DQ13901 141 aaKnown RBP9.39□□□□□ -0.91
LIG3-216ENST00000593099 PTGR1Q14914 329 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 C16orf72Q14CZ0 275 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 SGCBQ16585 318 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 PIGWQ7Z7B1 504 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 SPPL2CQ8IUH8 684 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 C19orf47Q8N9M1 422 aaKnown RBP9.39□□□□□ -0.91
LIG3-216ENST00000593099 OR5M3Q8NGP4 307 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 PTRH2Q9Y3E5 179 aaKnown RBP9.39□□□□□ -0.91
LIG3-216ENST00000593099 ZDBF2Q9HCK1 2354 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 HYKKA2RU49 373 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 PSMG1O95456 288 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 IFNGP01579 166 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 MATN1P21941 496 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 AHRP35869 848 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 HTR6P50406 440 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 INHBCP55103 352 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 POU6F2P78424 691 aaPredicted RBP9.39□□□□□ -0.91
LIG3-216ENST00000593099 CDK6Q00534 326 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 LGALS3BPQ08380 585 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 TTC23Q5W5X9 447 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 SLC2A7Q6PXP3 512 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 ZNF605Q86T29 641 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 OR9I1Q8NGQ6 314 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 TSPEARQ8WU66 669 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 LRRC58Q96CX6 371 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 DHRS4Q9BTZ2 278 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 KIR3DX1Q9H7L2 352 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 BRF2Q9HAW0 419 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 TBC1D29Q9UFV1 150 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 WDR45Q9Y484 360 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 IGHV1OR15-9A0A0B4J2B8 117 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 NOTOA8MTQ0 251 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 E7ENX8 843 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 PRR23D1E9PI22 279 aaPredicted RBP9.39□□□□□ -0.91
LIG3-216ENST00000593099 G3V2L1 256 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 EMC8O43402 210 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 SHOX2O60902 331 aaPredicted RBP9.39□□□□□ -0.91
LIG3-216ENST00000593099 RDH16O75452 317 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 KLHL18O94889 574 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 PEX11BO96011 259 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 FABP3P05413 133 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 PRR23D2P0DMB1 279 aaPredicted RBP9.39□□□□□ -0.91
LIG3-216ENST00000593099 PSMB5P28074 263 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 TAP2Q03519 686 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 SNTA1Q13424 505 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 NCF4Q15080 339 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 IZUMO2Q6UXV1 221 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 HPS6Q86YV9 775 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 MICU2Q8IYU8 434 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 MINDY1Q8N5J2 469 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 SLC22A8Q8TCC7 542 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 MAGEE2Q8TD90 523 aaPredicted RBP9.39□□□□□ -0.91
LIG3-216ENST00000593099 UQCC2Q9BRT2 126 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 ADI1Q9BV57 179 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 HHATLQ9HCP6 504 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 ZNF304Q9HCX3 659 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 DMRT3Q9NQL9 472 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 FGF21Q9NSA1 209 aa9.39□□□□□ -0.91
LIG3-216ENST00000593099 SPTY2D1-AS1A0A0U1RR47 76 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 KPNA4O00629 521 aaPredicted RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 TSPAN4O14817 238 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 TRAPPC6AO75865 159 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 ZNF888P0CJ79 500 aaPredicted RBP9.38□□□□□ -0.91
LIG3-216ENST00000593099 UQCRC2P22695 453 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 ABHD18Q0P651 414 aa9.38□□□□□ -0.91
LIG3-216ENST00000593099 DCST1Q5T197 706 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms