RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 USP28Q96RU2 1077 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 TPPP3Q9BW30 176 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 SHCBP1LQ9BZQ2 653 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 S1PR5Q9H228 398 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 ZFP14Q9HCL3 533 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 ZNF304Q9HCX3 659 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 IARS2Q9NSE4 1012 aaKnown RBP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 ANKRD10Q9NXR5 420 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 DNAJB4Q9UDY4 337 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 FBXL2Q9UKC9 423 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 BLOC1S6Q9UL45 172 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 CDC14AQ9UNH5 594 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 CLDN16Q9Y5I7 305 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 DYNC1LI1Q9Y6G9 523 aaKnown RBP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 A3GALT2U3KPV4 340 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 TTC3P53804 2025 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 LAMA3Q16787 3333 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 CGB1A6NKQ9 187 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 C2orf81A6NN90 581 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 MIF4GDA9UHW6 222 aaKnown RBP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 EBAG9O00559 213 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 NDUFS4O43181 175 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 XRCC3O43542 346 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 VEGFDO43915 354 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 ZIC3O60481 467 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 TSC22D2O75157 780 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 PEX11AO75192 247 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 RTN2O75298 545 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 AKR7A3O95154 331 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 ACSL3O95573 720 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 IFNB1P01574 187 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 GNAZP19086 355 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 NMBRP28336 390 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 HOXA11P31270 313 aaPredicted RBP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 HNRNPH3P31942 346 aaKnown RBP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 PIGAP37287 484 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 CLCN4P51793 760 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 IRX4P78413 519 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 IL1RL1Q01638 556 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 RHAGQ02094 409 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 CTTNQ14247 550 aaKnown RBP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 PIGHQ14442 188 aaPredicted RBP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 ZNF273Q14593 569 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 PDK1Q15118 436 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 PDK2Q15119 407 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 ALG11Q2TAA5 492 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 ANKDD1AQ495B1 522 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 IQCCQ4KMZ1 466 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 NIPAL1Q6NVV3 410 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 AFTPHQ6ULP2 937 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 LRRC31Q6UY01 552 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 ZNF852Q6ZMS4 543 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 LINGO2Q7L985 606 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 SETD3Q86TU7 594 aaPredicted RBP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 SFR1Q86XK3 245 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 MFSD6LQ8IWD5 586 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 KDM8Q8N371 416 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 WDR20Q8TBZ3 569 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 RNF139Q8WU17 664 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 TMEM170AQ8WVE7 144 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 INPP5DQ92835 1189 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 SEPT5Q99719 369 aaPredicted RBP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 SYT15Q9BQS2 421 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 MLPHQ9BV36 600 aaPredicted RBP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 KRTAP1-5Q9BYS1 174 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 MTMR12Q9C0I1 747 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 WNT5BQ9H1J7 359 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 ANKZF1Q9H8Y5 726 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 SYTL2Q9HCH5 934 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 ACSS1Q9NUB1 689 aaPredicted RBP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 DNAJC17Q9NVM6 304 aaKnown RBP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 RAB20Q9NX57 234 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 ANKMY1Q9P2S6 941 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 FETUBQ9UGM5 382 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 CHMP2BQ9UQN3 213 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 WDR37Q9Y2I8 494 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 LNP1A1A4G5 178 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 HACD1B0YJ81 288 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 PSMD11O00231 422 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 CYB561D2O14569 222 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 PRRG1O14668 218 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 TRDMT1O14717 391 aaKnown RBP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 POLR2DO15514 142 aaKnown RBP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 TTI1O43156 1089 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 DDHD2O94830 711 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 OR2C1O95371 312 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 PDGFBP01127 241 aaPredicted RBP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 APODP05090 189 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 KRT7P08729 469 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 ZDHHC11BP0C7U3 371 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 LINC00271P0C7V0 271 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 SPP1P10451 314 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 IGFBP2P18065 325 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 TNNI1P19237 187 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 PTPN3P26045 913 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 PIK3R1P27986 724 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 CHATP28329 748 aa1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 C21orf33P30042 268 aaPredicted RBP1.82□□□□□ -2.12
SMCHD1-211ENST00000584897 HLA-FP30511 346 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms