RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 TRBV11-1A0A0K0K1C0 115 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 NCF1BA6NI72 391 aaPredicted RBP13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 TMEM200CA6NKL6 621 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 NCF1CA8MVU1 366 aaPredicted RBP13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 NPIPA5E9PKD4 350 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 TGFBR3LH3BV60 316 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 PRRG2O14669 202 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 TUBB4AP04350 444 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 ESRRAP11474 423 aaPredicted RBP13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 MTHFD2P13995 350 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 NCF1P14598 390 aaPredicted RBP13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 EPB42P16452 691 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 ATP5A1P25705 553 aaKnown RBP13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 CASQ1P31415 396 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 PIK3CGP48736 1102 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 PLA2G16P53816 162 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 ADORA2A-AS1P86434 159 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 ACAP2Q15057 778 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 FAM83EQ2M2I3 478 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 MPEG1Q2M385 716 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 HYAL4Q2M3T9 481 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 DEPDC1Q5TB30 811 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 LIPJQ5W064 366 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 GRHL2Q6ISB3 625 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 ZDHHC24Q6UX98 284 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 HSDL2Q6YN16 418 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 UBE3DQ7Z6J8 389 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 CTAGE3PQ8IX95 158 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 DND1Q8IYX4 353 aaKnown RBP13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 ZCCHC7Q8N3Z6 543 aaKnown RBP13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 ACOT4Q8N9L9 421 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 OR7G3Q8NG95 312 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 OR5L2Q8NGL0 311 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 PTPMT1Q8WUK0 201 aaPredicted RBP13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 NCLNQ969V3 563 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 DMRTA2Q96SC8 542 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 CENPKQ9BS16 269 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 IGSF5Q9NSI5 407 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 OPTCQ9UBM4 332 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 NPIPA1Q9UND3 350 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 PCDHGA11Q9Y5H2 935 aa13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 TNPO3Q9Y5L0 923 aaKnown RBP13.49□□□□□ -0.25
SMARCE1-216ENST00000580419 INTS1Q8N201 2190 aaKnown RBP13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 H0YIV9 168 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 PEX1O43933 1283 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 CERS1P27544 350 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 HTR1EP28566 365 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 GALNSP34059 522 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 HNRNPFP52597 415 aaKnown RBP13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 PCBP2Q15366 365 aaKnown RBP eCLIP13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 AP5B1Q2VPB7 878 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 RNFT1Q5M7Z0 435 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 KHDRBS2Q5VWX1 349 aaKnown RBP13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 ARHGAP11AQ6P4F7 1023 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 PAOXQ6QHF9 649 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 DOLPP1Q86YN1 238 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 SULF2Q8IWU5 870 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 SPATA6LQ8N4H0 392 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 CPSF7Q8N684 471 aaKnown RBP13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 PPM1NQ8N819 430 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 SNX31Q8N9S9 440 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 TMEM52Q8NDY8 209 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 NUBPLQ8TB37 319 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 FBF1Q8TES7 1133 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 CCT6BQ92526 530 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 TANKQ92844 425 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 REPS1Q96D71 796 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 ART5Q96L15 291 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 F2RL3Q96RI0 385 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 SPOCK3Q9BQ16 436 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 TREX2Q9BQ50 279 aaPredicted RBP13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 PELOQ9BRX2 385 aaKnown RBP13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 ALOXE3Q9BYJ1 711 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 ALG9Q9H6U8 611 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 PNO1Q9NRX1 252 aaKnown RBP13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 TINAGQ9UJW2 476 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 EML6Q6ZMW3 1958 aa13.48□□□□□ -0.25
SMARCE1-216ENST00000580419 OR14I1A6ND48 311 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 FOXE1O00358 373 aaPredicted RBP13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 ADAM10O14672 748 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 CCNT2O60583 730 aaKnown RBP13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 PIAS1O75925 651 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 WISP2O76076 250 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 CLDN14O95500 239 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 COX7A2P14406 83 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 ABOP16442 354 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 PTX3P26022 381 aaPredicted RBP13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 TNFRSF8P28908 595 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 MEOX1P50221 254 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 ALDH18A1P54886 795 aaKnown RBP13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 CKAP4Q07065 602 aaKnown RBP13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 STX4Q12846 297 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 DLG1Q12959 904 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 CUL3Q13618 768 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 SETDB1Q15047 1291 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 NDUFAF5Q5TEU4 345 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 ZNF793Q6ZN11 406 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 CAPN12Q6ZSI9 719 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 RAPH1Q70E73 1250 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 GDF7Q7Z4P5 450 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms