RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 RBCK1Q9BYM8 510 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 ACTL8Q9H568 366 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 NPHS2Q9NP85 383 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 LANCL2Q9NS86 450 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 NOP53Q9NZM5 478 aaKnown RBP16.1■□□□□ 0.17
NUP88-210ENST00000574867 GIMAP2Q9UG22 337 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 PTRH2Q9Y3E5 179 aaKnown RBP16.1■□□□□ 0.17
NUP88-210ENST00000574867 CLDN4O14493 209 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 PROM1O43490 865 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 PRPS2P11908 318 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 LIFP15018 202 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 EIF2S3P41091 472 aaKnown RBP16.1■□□□□ 0.17
NUP88-210ENST00000574867 GNGT1P63211 74 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 KLC1Q07866 573 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 MINDY4Q4G0A6 757 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 SLC9B1Q4ZJI4 515 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 CEP70Q8NHQ1 597 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 NAF1Q96HR8 494 aaKnown RBP16.1■□□□□ 0.17
NUP88-210ENST00000574867 SOX17Q9H6I2 414 aaPredicted RBP16.1■□□□□ 0.17
NUP88-210ENST00000574867 WDR55Q9H6Y2 383 aaPredicted RBP16.1■□□□□ 0.17
NUP88-210ENST00000574867 MYNNQ9NPC7 610 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 TEX10Q9NXF1 929 aaPredicted RBP16.1■□□□□ 0.17
NUP88-210ENST00000574867 EIF3LQ9Y262 564 aaKnown RBP16.1■□□□□ 0.17
NUP88-210ENST00000574867 DLGAP4Q9Y2H0 992 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 MMACHCQ9Y4U1 282 aa16.1■□□□□ 0.17
NUP88-210ENST00000574867 GOLGA8QA0A0J9YX86 632 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 GOLGA8OA6NCC3 632 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 SYNDIG1LA6NDD5 238 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 GOLGA8NF8WBI6 632 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 PCDH17O14917 1159 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 KLK10O43240 276 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 AIFM1O95831 613 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 PCSK2P16519 638 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 SDC1P18827 310 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 F8A1P23610 371 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 HSD17B7P56937 341 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 NDUFAF5Q5TEU4 345 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 MFSD4BQ5TF39 518 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 QSOX2Q6ZRP7 698 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 VASH2Q86V25 355 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 C16orf78Q8WTQ4 265 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 ZCCHC14Q8WYQ9 949 aaKnown RBP16.09■□□□□ 0.17
NUP88-210ENST00000574867 TM4SF18Q96CE8 201 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 CRB3Q9BUF7 120 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 C1orf50Q9BV19 199 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 NSRP1Q9H0G5 558 aaKnown RBP16.09■□□□□ 0.17
NUP88-210ENST00000574867 WDR70Q9NW82 654 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 MKL2Q9ULH7 1088 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 A0A1W2PR48 441 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 C1orf226A1L170 272 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 IDSB3KWA1 339 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 JRKO75564 520 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 APC2O95996 2303 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 IGHEP01854 428 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 PPP2R1BP30154 601 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 ASMTP46597 345 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 TAS2R50P59544 299 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 HEPACAMQ14CZ8 416 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 NXNQ6DKJ4 435 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 OR52E8Q6IFG1 317 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 PROSER1Q86XN7 944 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 PRSS58Q8IYP2 241 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 FAM9CQ8IZT9 166 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 TMEM132CQ8N3T6 1108 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 C7orf57Q8NEG2 295 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 SLC45A3Q96JT2 553 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 VN1R1Q9GZP7 353 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 RPF2Q9H7B2 306 aaKnown RBP16.09■□□□□ 0.17
NUP88-210ENST00000574867 TCF7L2Q9NQB0 619 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 SEMA3GQ9NS98 782 aa16.09■□□□□ 0.17
NUP88-210ENST00000574867 FAM227AF5H4B4 570 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 B4GALT2O60909 372 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 CDC123O75794 336 aaPredicted RBP16.08■□□□□ 0.16
NUP88-210ENST00000574867 HEXBP07686 556 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 IL3P08700 152 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 BCKDHAP12694 445 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 DRD2P14416 443 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 IDH3AP50213 366 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 IL23RQ5VWK5 629 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 SHISA6Q6ZSJ9 500 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 SPATA19Q7Z5L4 167 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 SHISA5Q8N114 240 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.08■□□□□ 0.16
NUP88-210ENST00000574867 TANKQ92844 425 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 NACC2Q96BF6 587 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 CCNL2Q96S94 520 aaPredicted RBP16.08■□□□□ 0.16
NUP88-210ENST00000574867 CCDC28BQ9BUN5 200 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 PRTFDC1Q9NRG1 225 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 IL17BQ9UHF5 180 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 C3orf18Q9UK00 162 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 PCDHA9Q9Y5H5 950 aa16.08■□□□□ 0.16
NUP88-210ENST00000574867 PRMT3O60678 531 aa16.07■□□□□ 0.16
NUP88-210ENST00000574867 RECKO95980 971 aa16.07■□□□□ 0.16
NUP88-210ENST00000574867 UMODP07911 640 aa16.07■□□□□ 0.16
NUP88-210ENST00000574867 EMP2P54851 167 aa16.07■□□□□ 0.16
NUP88-210ENST00000574867 RPS18P62269 152 aaKnown RBP16.07■□□□□ 0.16
NUP88-210ENST00000574867 RHAGQ02094 409 aa16.07■□□□□ 0.16
NUP88-210ENST00000574867 ERV3-1Q14264 604 aa16.07■□□□□ 0.16
NUP88-210ENST00000574867 C18orf63Q68DL7 685 aa16.07■□□□□ 0.16
NUP88-210ENST00000574867 SCUBE1Q8IWY4 988 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms