RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 DEFB126Q9BYW3 111 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 MRPL46Q9H2W6 279 aaKnown RBP18.95■□□□□ 0.62
CLK3-225ENST00000569063 NOL11Q9H8H0 719 aaKnown RBP18.95■□□□□ 0.62
CLK3-225ENST00000569063 TRIM45Q9H8W5 580 aaPredicted RBP18.95■□□□□ 0.62
CLK3-225ENST00000569063 VTI1BQ9UEU0 232 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 ERRFI1Q9UJM3 462 aaPredicted RBP18.95■□□□□ 0.62
CLK3-225ENST00000569063 PCTPQ9UKL6 214 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 SLC5A6Q9Y289 635 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 RNF11Q9Y3C5 154 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 SPACA6W5XKT8 324 aa18.95■□□□□ 0.62
CLK3-225ENST00000569063 WIPF3A6NGB9 483 aa18.94■□□□□ 0.62
CLK3-225ENST00000569063 FOXE1O00358 373 aaPredicted RBP18.94■□□□□ 0.62
CLK3-225ENST00000569063 PLPP1O14494 284 aa18.94■□□□□ 0.62
CLK3-225ENST00000569063 NEURL1O76050 574 aa18.94■□□□□ 0.62
CLK3-225ENST00000569063 CLDN9O95484 217 aa18.94■□□□□ 0.62
CLK3-225ENST00000569063 TRHRP34981 398 aaPredicted RBP18.94■□□□□ 0.62
CLK3-225ENST00000569063 RAP1GDS1P52306 607 aa18.94■□□□□ 0.62
CLK3-225ENST00000569063 RPS13P62277 151 aaKnown RBP18.94■□□□□ 0.62
CLK3-225ENST00000569063 SLAMF1Q13291 335 aa18.94■□□□□ 0.62
CLK3-225ENST00000569063 CUL3Q13618 768 aa18.94■□□□□ 0.62
CLK3-225ENST00000569063 SERTAD2Q14140 314 aa18.94■□□□□ 0.62
CLK3-225ENST00000569063 ELAVL1Q15717 326 aaKnown RBP18.94■□□□□ 0.62
CLK3-225ENST00000569063 SPINK14Q6IE38 97 aa18.94■□□□□ 0.62
CLK3-225ENST00000569063 TMEM132CQ8N3T6 1108 aa18.94■□□□□ 0.62
CLK3-225ENST00000569063 ZCCHC7Q8N3Z6 543 aaKnown RBP18.94■□□□□ 0.62
CLK3-225ENST00000569063 EIF1ADQ8N9N8 165 aaKnown RBP18.94■□□□□ 0.62
CLK3-225ENST00000569063 C7orf57Q8NEG2 295 aa18.94■□□□□ 0.62
CLK3-225ENST00000569063 VMP1Q96GC9 406 aa18.94■□□□□ 0.62
CLK3-225ENST00000569063 ALOXE3Q9BYJ1 711 aa18.94■□□□□ 0.62
CLK3-225ENST00000569063 MS4A12Q9NXJ0 267 aa18.94■□□□□ 0.62
CLK3-225ENST00000569063 LRFN1Q9P244 771 aa18.94■□□□□ 0.62
CLK3-225ENST00000569063 FETUBQ9UGM5 382 aa18.94■□□□□ 0.62
CLK3-225ENST00000569063 TRBV11-1A0A0K0K1C0 115 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 FCHO1O14526 889 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 SBK3P0C264 359 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 GP1BBP13224 206 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 CD46P15529 392 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 CPN2P22792 545 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 ST13P50502 369 aaKnown RBP18.93■□□□□ 0.62
CLK3-225ENST00000569063 OC90Q02509 493 aaPredicted RBP18.93■□□□□ 0.62
CLK3-225ENST00000569063 STX4Q12846 297 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 SLC29A2Q14542 456 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 ZRSR2Q15696 482 aaKnown RBP18.93■□□□□ 0.62
CLK3-225ENST00000569063 ZNF468Q5VIY5 522 aaPredicted RBP18.93■□□□□ 0.62
CLK3-225ENST00000569063 LCA5Q86VQ0 697 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 CNPY4Q8N129 248 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 LRRN4CLQ8ND94 238 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 OR52B6Q8NGF0 335 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 ATP6V1E2Q96A05 226 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 SORBS1Q9BX66 1292 aaKnown RBP18.93■□□□□ 0.62
CLK3-225ENST00000569063 EPB41L4BQ9H329 900 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 ZBTB26Q9HCK0 441 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 ZNF223Q9UK11 482 aaPredicted RBP18.93■□□□□ 0.62
CLK3-225ENST00000569063 PPT2Q9UMR5 302 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 CLCA3PQ9Y6N3 262 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 DOPEY2Q9Y3R5 2298 aa18.93■□□□□ 0.62
CLK3-225ENST00000569063 LDB3O75112 727 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 IFNA16P05015 189 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 SP1P08047 785 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 RNF224P0DH78 156 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 CYB561P49447 251 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 HLCSP50747 726 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 CCNG1P51959 295 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 GPR180Q86V85 440 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 TMEM178AQ8NBL3 297 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 MORN4Q8NDC4 146 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 PTPMT1Q8WUK0 201 aaPredicted RBP18.92■□□□□ 0.62
CLK3-225ENST00000569063 DAZLQ92904 295 aaKnown RBP18.92■□□□□ 0.62
CLK3-225ENST00000569063 NCLNQ969V3 563 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 ANKRD9Q96BM1 317 aaPredicted RBP18.92■□□□□ 0.62
CLK3-225ENST00000569063 C5orf34Q96MH7 638 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 NSUN5Q96P11 429 aaKnown RBP18.92■□□□□ 0.62
CLK3-225ENST00000569063 CDK15Q96Q40 435 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 C1QTNF3Q9BXJ4 246 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 ZNF717Q9BY31 904 aaPredicted RBP18.92■□□□□ 0.62
CLK3-225ENST00000569063 DDX31Q9H8H2 851 aaKnown RBP18.92■□□□□ 0.62
CLK3-225ENST00000569063 L2HGDHQ9H9P8 463 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 KLHL1Q9NR64 748 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 FBXW2Q9UKT8 454 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 OSGIN2Q9Y236 505 aa18.92■□□□□ 0.62
CLK3-225ENST00000569063 RP1L1Q8IWN7 2480 aaPredicted RBP18.91■□□□□ 0.62
CLK3-225ENST00000569063 IQANK1A0A1B0GTG1 560 aa18.91■□□□□ 0.62
CLK3-225ENST00000569063 ASPDHA6ND91 283 aa18.91■□□□□ 0.62
CLK3-225ENST00000569063 LDLRP01130 860 aa18.91■□□□□ 0.62
CLK3-225ENST00000569063 RPS17P08708 135 aaKnown RBP18.91■□□□□ 0.62
CLK3-225ENST00000569063 MST1P26927 711 aa18.91■□□□□ 0.62
CLK3-225ENST00000569063 NEK2P51955 445 aa18.91■□□□□ 0.62
CLK3-225ENST00000569063 TRAF3Q13114 568 aa18.91■□□□□ 0.62
CLK3-225ENST00000569063 C4orf17Q53FE4 359 aa18.91■□□□□ 0.62
CLK3-225ENST00000569063 C10orf62Q5T681 223 aaPredicted RBP18.91■□□□□ 0.62
CLK3-225ENST00000569063 SLC25A25Q6KCM7 469 aa18.91■□□□□ 0.62
CLK3-225ENST00000569063 ZNF227Q86WZ6 799 aa18.91■□□□□ 0.62
CLK3-225ENST00000569063 OR14A16Q8NHC5 309 aa18.91■□□□□ 0.62
CLK3-225ENST00000569063 CCDC77Q9BR77 488 aa18.91■□□□□ 0.62
CLK3-225ENST00000569063 HES7Q9BYE0 225 aa18.91■□□□□ 0.62
CLK3-225ENST00000569063 PHF11Q9UIL8 331 aa18.91■□□□□ 0.62
CLK3-225ENST00000569063 USP9XQ93008 2570 aaPredicted RBP18.91■□□□□ 0.62
CLK3-225ENST00000569063 HECTD1Q9ULT8 2610 aa18.91■□□□□ 0.62
CLK3-225ENST00000569063 A0A0A6YYD5 115 aa18.9■□□□□ 0.62
CLK3-225ENST00000569063 A8MT66 165 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms