RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 HORMAD2Q8N7B1 307 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 SMYD1Q8NB12 490 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 OR4C15Q8NGM1 316 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 ZNF300Q96RE9 604 aaPredicted RBP19.28■□□□□ 0.68
CLN3-230ENST00000568076 DCUN1D5Q9BTE7 237 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 C1QTNF7Q9BXJ2 289 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 ADAM29Q9UKF5 820 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 A0A0A6YYD5 115 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 A0A1B0GVG6 124 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 TRBC2A0A5B9 178 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 POM121BA6NF01 834 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 TRIM64BA6NI03 449 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 C4orf51C9J302 202 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 TNFRSF11BO00300 401 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 CACNB4O00305 520 aaPredicted RBP19.28■□□□□ 0.68
CLN3-230ENST00000568076 RECKO95980 971 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 CDK4P11802 303 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 PCMT1P22061 227 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 NPRL3Q12980 569 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 HSPB3Q12988 150 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 KIAA1614Q5VZ46 1190 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 SDE2Q6IQ49 451 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 CEACAM20Q6UY09 585 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 FBXL6Q8N531 539 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 PDXPQ96GD0 296 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 MACROD1Q9BQ69 325 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 C17orf62Q9BQA9 187 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 RAB11FIP5Q9BXF6 653 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 KLHL31Q9H511 634 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 MVB12BQ9H7P6 319 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 TIMMDC1Q9NPL8 285 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 CD93Q9NPY3 652 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 THSD1Q9NS62 852 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 SPHK1Q9NYA1 384 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 RAB23Q9ULC3 237 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 ANGPT4Q9Y264 503 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 HSPE1-MOB4S4R3N1 261 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 J3KTA2 159 aa19.27■□□□□ 0.68
CLN3-230ENST00000568076 HAT1O14929 419 aa19.27■□□□□ 0.68
CLN3-230ENST00000568076 ADAMDEC1O15204 470 aa19.27■□□□□ 0.68
CLN3-230ENST00000568076 KCNJ13O60928 360 aa19.27■□□□□ 0.68
CLN3-230ENST00000568076 FUT4P22083 530 aa19.27■□□□□ 0.68
CLN3-230ENST00000568076 RXRGP48443 463 aa19.27■□□□□ 0.68
CLN3-230ENST00000568076 CLDN2P57739 230 aa19.27■□□□□ 0.68
CLN3-230ENST00000568076 HYAL2Q12891 473 aa19.27■□□□□ 0.68
CLN3-230ENST00000568076 TNFAIP8L2Q6P589 184 aaPredicted RBP19.27■□□□□ 0.68
CLN3-230ENST00000568076 JPH3Q8WXH2 748 aaPredicted RBP19.27■□□□□ 0.68
CLN3-230ENST00000568076 LZICQ8WZA0 190 aa19.27■□□□□ 0.68
CLN3-230ENST00000568076 NODALQ96S42 347 aa19.27■□□□□ 0.68
CLN3-230ENST00000568076 ZNF347Q96SE7 839 aa19.27■□□□□ 0.68
CLN3-230ENST00000568076 PITX2Q99697 317 aa19.27■□□□□ 0.68
CLN3-230ENST00000568076 SYNPO2LQ9H987 977 aa19.27■□□□□ 0.68
CLN3-230ENST00000568076 PREBQ9HCU5 417 aa19.27■□□□□ 0.68
CLN3-230ENST00000568076 MRPS30Q9NP92 439 aaKnown RBP19.27■□□□□ 0.68
CLN3-230ENST00000568076 PRSS38A1L453 326 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 WASHC1A8K0Z3 465 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 MAPK10P53779 464 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 RPP38P78345 283 aaKnown RBP19.26■□□□□ 0.67
CLN3-230ENST00000568076 HTR4Q13639 388 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 ZIC1Q15915 447 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 RPS26P11Q5JNZ5 115 aaPredicted RBP19.26■□□□□ 0.67
CLN3-230ENST00000568076 WASH2PQ6VEQ5 465 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 NATD1Q8N6N6 113 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 OR52J3Q8NH60 311 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 GIPC3Q8TF64 312 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 UBE2FQ969M7 185 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 ZNF764Q96H86 408 aaPredicted RBP19.26■□□□□ 0.67
CLN3-230ENST00000568076 RIPOR3Q96MK2 946 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 RSPO3Q9BXY4 272 aaPredicted RBP19.26■□□□□ 0.67
CLN3-230ENST00000568076 NEUROD4Q9HD90 331 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 RLIMQ9NVW2 624 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 CA5BQ9Y2D0 317 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 F5P12259 2224 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 AXIN1O15169 862 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 EML2O95834 649 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 SSR2P43308 183 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 CDH12P55289 794 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 SPIBQ01892 262 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 TUBA3CQ13748 450 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 EP400NLQ6ZTU2 488 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 MTSS1LQ765P7 747 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 TSPYL5Q86VY4 417 aaPredicted RBP19.26■□□□□ 0.67
CLN3-230ENST00000568076 OR2L3Q8NG85 312 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 MUL1Q969V5 352 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 FEVQ99581 238 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 APOL4Q9BPW4 351 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 DPH7Q9BTV6 452 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 GABARAPL3Q9BY60 117 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 OCEL1Q9H607 264 aa19.26■□□□□ 0.67
CLN3-230ENST00000568076 A0A1W2PPW3 197 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 H0Y8X5 98 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 PRKRAO75569 313 aaKnown RBP19.25■□□□□ 0.67
CLN3-230ENST00000568076 JUNDP17535 347 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 XCR1P46094 333 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 GSTM5P46439 218 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 MAD2L1BPQ15013 274 aaPredicted RBP19.25■□□□□ 0.67
CLN3-230ENST00000568076 TCEA2Q15560 299 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 MAPK11Q15759 364 aa19.25■□□□□ 0.67
CLN3-230ENST00000568076 SMN1Q16637 294 aaKnown RBP19.25■□□□□ 0.67
CLN3-230ENST00000568076 DUSP7Q16829 419 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms