RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 CTAGE3PQ8IX95 158 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 MORN4Q8NDC4 146 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 PSD4Q8NDX1 1056 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 SRFBP1Q8NEF9 429 aaKnown RBP14.95□□□□□ -0.02
CLN3-229ENST00000567963 STAG3L4Q8TBR4 150 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 DAZLQ92904 295 aaKnown RBP14.95□□□□□ -0.02
CLN3-229ENST00000567963 LYRM4Q9HD34 91 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 TIMMDC1Q9NPL8 285 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 DEPPQ9NTK1 212 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 ERVK-11Q9UQG0 969 aa14.95□□□□□ -0.02
CLN3-229ENST00000567963 CACNA1CQ13936 2221 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 MYOCOSA0A1B0GUC4 107 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 A8MVJ9 347 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 CDC40O60508 579 aaKnown RBP eCLIP14.94□□□□□ -0.02
CLN3-229ENST00000567963 S100BP04271 92 aaPredicted RBP14.94□□□□□ -0.02
CLN3-229ENST00000567963 TUBB4AP04350 444 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 GMPRP36959 345 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 MSH2P43246 934 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 KIR3DL1P43629 444 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 STX4Q12846 297 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 KBTBD12Q3ZCT8 623 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 IL20RBQ6UXL0 311 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 HSDL2Q6YN16 418 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 ZNF793Q6ZN11 406 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 LRRC70Q7Z2Q7 622 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 GPALPP1Q8IXQ4 340 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 ZNF295-AS1Q8N0V1 137 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 OR52N2Q8NGI0 321 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 ZNF473Q8WTR7 871 aaKnown RBP14.94□□□□□ -0.02
CLN3-229ENST00000567963 ASB15Q8WXK1 588 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 EXT2Q93063 718 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 MAPKAP1Q9BPZ7 522 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 TBCDQ9BTW9 1192 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 MS4A8Q9BY19 250 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 ROGDIQ9GZN7 287 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 ALG9Q9H6U8 611 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 PLSCR2Q9NRY7 297 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 HPF1Q9NWY4 346 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 PPT2Q9UMR5 302 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 HRH3Q9Y5N1 445 aa14.94□□□□□ -0.02
CLN3-229ENST00000567963 WWP2O00308 870 aa14.93□□□□□ -0.02
CLN3-229ENST00000567963 LDB3O75112 727 aa14.93□□□□□ -0.02
CLN3-229ENST00000567963 FAM155BO75949 473 aa14.93□□□□□ -0.02
CLN3-229ENST00000567963 TPOP07202 933 aa14.93□□□□□ -0.02
CLN3-229ENST00000567963 SLC35E2BP0CK96 405 aa14.93□□□□□ -0.02
CLN3-229ENST00000567963 ATP5A1P25705 553 aaKnown RBP14.93□□□□□ -0.02
CLN3-229ENST00000567963 DLG1Q12959 904 aa14.93□□□□□ -0.02
CLN3-229ENST00000567963 SERTAD2Q14140 314 aa14.93□□□□□ -0.02
CLN3-229ENST00000567963 RAPH1Q70E73 1250 aa14.93□□□□□ -0.02
CLN3-229ENST00000567963 CD163Q86VB7 1156 aa14.93□□□□□ -0.02
CLN3-229ENST00000567963 LAS2Q8IYD9 372 aa14.93□□□□□ -0.02
CLN3-229ENST00000567963 ACOT4Q8N9L9 421 aa14.93□□□□□ -0.02
CLN3-229ENST00000567963 OR14A16Q8NHC5 309 aa14.93□□□□□ -0.02
CLN3-229ENST00000567963 CA5BP1Q8WTZ4 195 aa14.93□□□□□ -0.02
CLN3-229ENST00000567963 LURAP1Q96LR2 239 aa14.93□□□□□ -0.02
CLN3-229ENST00000567963 RASL10BQ96S79 203 aa14.93□□□□□ -0.02
CLN3-229ENST00000567963 PHACTR1Q9C0D0 580 aa14.93□□□□□ -0.02
CLN3-229ENST00000567963 C17orf105B2RV13 164 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 RTCAO00442 366 aaKnown RBP14.92□□□□□ -0.02
CLN3-229ENST00000567963 PDE9AO76083 593 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 OR6B1O95007 311 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 TGFB1P01137 390 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 TNNI3P19429 210 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 SOX3P41225 446 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 HK2P52789 917 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 PLTPP55058 493 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 PCDH1Q08174 1060 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 C2orf54Q08AI8 447 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 TMEM35AQ53FP2 167 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 ARHGAP11AQ6P4F7 1023 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 CHSY3Q70JA7 882 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 CMC1Q7Z7K0 106 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 PPM1NQ8N819 430 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 ZNF321PQ8N8H1 164 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 OR8K3Q8NH51 312 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 UBE2E3Q969T4 207 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 SDCCAG3Q96C92 435 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 ATOH8Q96SQ7 321 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 OR8D2Q9GZM6 311 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 NMRAL1Q9HBL8 299 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 COQ3Q9NZJ6 369 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 NUDT4Q9NZJ9 180 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 UTP11Q9Y3A2 253 aaKnown RBP14.92□□□□□ -0.02
CLN3-229ENST00000567963 EML6Q6ZMW3 1958 aa14.92□□□□□ -0.02
CLN3-229ENST00000567963 PINLYPA6NC86 204 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 SH3BGRLO75368 114 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 SCELO95171 688 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 LTA4HP09960 611 aaKnown RBP14.91□□□□□ -0.02
CLN3-229ENST00000567963 PCNAP12004 261 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 HIST1H1TP22492 207 aaPredicted RBP14.91□□□□□ -0.02
CLN3-229ENST00000567963 CRABP2P29373 138 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 MAGEA4P43358 317 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 NR0B1P51843 470 aaKnown RBP14.91□□□□□ -0.02
CLN3-229ENST00000567963 RNF4P78317 190 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 CAV1Q03135 178 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 SLMAPQ14BN4 828 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 AP5B1Q2VPB7 878 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 MED27Q6P2C8 311 aa14.91□□□□□ -0.02
CLN3-229ENST00000567963 TBC1D1Q86TI0 1168 aaPredicted RBP14.91□□□□□ -0.02
CLN3-229ENST00000567963 MARVELD2Q8N4S9 558 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms