RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ZNF33BQ06732 778 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 STX4Q12846 297 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 TRAF3Q13114 568 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 SERTAD2Q14140 314 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 IGFBP7Q16270 282 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 CCDC153Q494R4 210 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 FRG2Q64ET8 278 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 RPUSD3Q6P087 351 aaKnown RBP12.55□□□□□ -0.4
CLK3-216ENST00000564468 ZNF793Q6ZN11 406 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 UBE3DQ7Z6J8 389 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 LGI4Q8N135 537 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 ZCCHC7Q8N3Z6 543 aaKnown RBP12.55□□□□□ -0.4
CLK3-216ENST00000564468 FAM47BQ8NA70 645 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 GALNT11Q8NCW6 608 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 OR4F6Q8NGB9 312 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 NSUN5Q96P11 429 aaKnown RBP12.55□□□□□ -0.4
CLK3-216ENST00000564468 CDK15Q96Q40 435 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 FRG2BQ96QU4 278 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.55□□□□□ -0.4
CLK3-216ENST00000564468 ELOVL6Q9H5J4 265 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 AGPAT4Q9NRZ5 378 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 NMRK1Q9NWW6 199 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 KCMF1Q9P0J7 381 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 LUZP4Q9P127 313 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 SNX6Q9UNH7 406 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 COPG1Q9Y678 874 aaKnown RBP12.55□□□□□ -0.4
CLK3-216ENST00000564468 A0A1W2PPM1 405 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 CCDC151A5D8V7 595 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 SMIM23A6NLE4 172 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 SAP18O00422 153 aaKnown RBP12.54□□□□□ -0.4
CLK3-216ENST00000564468 RTCAO00442 366 aaKnown RBP12.54□□□□□ -0.4
CLK3-216ENST00000564468 PLPP1O14494 284 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 DLX3O60479 287 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 SEMA3DO95025 777 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 TUBBP07437 444 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 NUDT17P0C025 328 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 PPP2R1BP30154 601 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 BUD31P41223 144 aaPredicted RBP12.54□□□□□ -0.4
CLK3-216ENST00000564468 PRKAA2P54646 552 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 IFFO1Q0D2I5 559 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 SLAMF1Q13291 335 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 ACER2Q5QJU3 275 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 ZNF678Q5SXM1 525 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 CYP20A1Q6UW02 462 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 PAGE2Q7Z2X7 111 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 CUZD1Q86UP6 607 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 GPR180Q86V85 440 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 TMEM132CQ8N3T6 1108 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 OR1N1Q8NGS0 311 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 ELP5Q8TE02 316 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 DAZLQ92904 295 aaKnown RBP12.54□□□□□ -0.4
CLK3-216ENST00000564468 PSMG3-AS1Q96PY0 264 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 MAPKAP1Q9BPZ7 522 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 ROPN1BQ9BZX4 212 aaPredicted RBP12.54□□□□□ -0.4
CLK3-216ENST00000564468 WDR41Q9HAD4 459 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 ROPN1Q9HAT0 212 aaPredicted RBP12.54□□□□□ -0.4
CLK3-216ENST00000564468 ADAP2Q9NPF8 381 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 PNO1Q9NRX1 252 aaKnown RBP12.54□□□□□ -0.4
CLK3-216ENST00000564468 LYARQ9NX58 379 aaKnown RBP12.54□□□□□ -0.4
CLK3-216ENST00000564468 TRPS1Q9UHF7 1281 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 MID2Q9UJV3 735 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 FBXW2Q9UKT8 454 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 PLAAQ9Y263 795 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 PCDHGA10Q9Y5H3 936 aa12.54□□□□□ -0.4
CLK3-216ENST00000564468 TLDC2A0PJX2 215 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 CLEC18AA5D8T8 446 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 OR5H15A6NDH6 313 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 A8MUA0 341 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 H3BQF6 201 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 COPEO14579 308 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 MYO1DO94832 1006 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 WDPCPO95876 746 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 KRT6AP02538 564 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 KRT6BP04259 564 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 IFNA16P05015 189 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 MYL2P10916 166 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 CRHR1P34998 444 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 KRT6CP48668 564 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 TNFSF10P50591 281 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 CLCN2P51788 898 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 NEK2P51955 445 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 CDH13P55290 713 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 ELAVL1Q15717 326 aaKnown RBP12.53□□□□□ -0.4
CLK3-216ENST00000564468 INAQ16352 499 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 UNC50Q53HI1 259 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 CLEC18BQ6UXF7 455 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 NUDT13Q86X67 352 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 RNF175Q8N4F7 328 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 CISD2Q8N5K1 135 aaKnown RBP12.53□□□□□ -0.4
CLK3-216ENST00000564468 HORMAD2Q8N7B1 307 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 CLEC18CQ8NCF0 446 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 B3GNT7Q8NFL0 401 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 RDH11Q8TC12 318 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 EPS8L3Q8TE67 593 aaKnown RBP12.53□□□□□ -0.4
CLK3-216ENST00000564468 TRPC4APQ8TEL6 797 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 AENQ8WTP8 325 aaKnown RBP12.53□□□□□ -0.4
CLK3-216ENST00000564468 SELENOMQ8WWX9 145 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 TANKQ92844 425 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 CAVIN3Q969G5 261 aa12.53□□□□□ -0.4
CLK3-216ENST00000564468 SNRNP40Q96DI7 357 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms