RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 C5AR2Q9P296 337 aa12.03□□□□□ -0.48
USP3-213ENST00000559711 FANCMQ8IYD8 2048 aa12.02□□□□□ -0.48
USP3-213ENST00000559711 COL6A3P12111 3177 aa12.02□□□□□ -0.48
USP3-213ENST00000559711 PGRMC2O15173 223 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 AIFM1O95831 613 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 PDGFBP01127 241 aaPredicted RBP12.02□□□□□ -0.49
USP3-213ENST00000559711 LDLRP01130 860 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 NUDT7P0C024 238 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 UQCRBP14927 111 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 CAPZBP47756 277 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 FNTBP49356 437 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 SIGLEC14Q08ET2 396 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 SUZ12Q15022 739 aaKnown RBP12.02□□□□□ -0.49
USP3-213ENST00000559711 NKG7Q16617 165 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 COX20Q5RI15 118 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 INTS11Q5TA45 600 aaKnown RBP12.02□□□□□ -0.49
USP3-213ENST00000559711 FAM180BQ6P0A1 224 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 TSSK4Q6SA08 328 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 C11orf65Q8NCR3 313 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 RERGQ96A58 199 aaPredicted RBP12.02□□□□□ -0.49
USP3-213ENST00000559711 NEURL3Q96EH8 262 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 PYURFQ96I23 114 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 TRAPPC9Q96Q05 1148 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 SERINC2Q96SA4 455 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 NLNQ9BYT8 704 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 SIRT3Q9NTG7 399 aaPredicted RBP12.02□□□□□ -0.49
USP3-213ENST00000559711 UCKL1Q9NWZ5 548 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 UTS2RQ9UKP6 389 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 FAF1Q9UNN5 650 aaPredicted RBP12.02□□□□□ -0.49
USP3-213ENST00000559711 SAMD4AQ9UPU9 718 aaKnown RBP12.02□□□□□ -0.49
USP3-213ENST00000559711 CSNK1G3Q9Y6M4 447 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 V9GYQ6 96 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 CROCCQ5TZA2 2017 aa12.02□□□□□ -0.49
USP3-213ENST00000559711 FAM149AA5PLN7 773 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 MYO1GB0I1T2 1018 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 CLOCKO15516 846 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 SH3BP5O60239 455 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 PRSS23O95084 383 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 PROS1P07225 676 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 ETFAP13804 333 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 ST6GAL1P15907 406 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 CKMT2P17540 419 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 CHI3L1P36222 383 aaPredicted RBP12.01□□□□□ -0.49
USP3-213ENST00000559711 CRATP43155 626 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 CTSKP43235 329 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 HSPA13P48723 471 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 SNRPNP63162 240 aaKnown RBP12.01□□□□□ -0.49
USP3-213ENST00000559711 TEAD4Q15561 434 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 CEBPEQ15744 281 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 DEFB133Q30KQ1 61 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 C14orf28Q4W4Y0 310 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 SAXO2Q658L1 398 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 SLC48A1Q6P1K1 146 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 ZBTB49Q6ZSB9 765 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 FKBP9P1Q75LS8 142 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 ABHD13Q7L211 337 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 ZNF655Q8N720 491 aaPredicted RBP12.01□□□□□ -0.49
USP3-213ENST00000559711 PACRGLQ8N7B6 248 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 SLC47A1Q96FL8 570 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 ZNF597Q96LX8 424 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 AMDHD1Q96NU7 426 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 SLC38A3Q99624 504 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 SLC29A1Q99808 456 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 CIB1Q99828 191 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 MAPKAP1Q9BPZ7 522 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 BDH2Q9BUT1 245 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 ASPSCR1Q9BZE9 553 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 GLIPR2Q9H4G4 154 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 PRDM9Q9NQV7 894 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 C8orf4Q9NR00 106 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 KCMF1Q9P0J7 381 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 FBXW2Q9UKT8 454 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 ACSL6Q9UKU0 697 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 RAB26Q9ULW5 256 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 SNX11Q9Y5W9 270 aa12.01□□□□□ -0.49
USP3-213ENST00000559711 RNF103-CHMP3A0A140T963 221 aa12□□□□□ -0.49
USP3-213ENST00000559711 A0A1B0GVT2 93 aa12□□□□□ -0.49
USP3-213ENST00000559711 WASHC1A8K0Z3 465 aa12□□□□□ -0.49
USP3-213ENST00000559711 ACOX3O15254 700 aa12□□□□□ -0.49
USP3-213ENST00000559711 DEAF1O75398 565 aaPredicted RBP12□□□□□ -0.49
USP3-213ENST00000559711 ALOX12P18054 663 aa12□□□□□ -0.49
USP3-213ENST00000559711 ZNF10P21506 573 aaPredicted RBP12□□□□□ -0.49
USP3-213ENST00000559711 EEF1A2Q05639 463 aaKnown RBP12□□□□□ -0.49
USP3-213ENST00000559711 GCNT6Q5T4J0 391 aa12□□□□□ -0.49
USP3-213ENST00000559711 C18orf63Q68DL7 685 aa12□□□□□ -0.49
USP3-213ENST00000559711 TMEM214Q6NUQ4 689 aaKnown RBP12□□□□□ -0.49
USP3-213ENST00000559711 CBLL1Q75N03 491 aa12□□□□□ -0.49
USP3-213ENST00000559711 EIF3MQ7L2H7 374 aaKnown RBP12□□□□□ -0.49
USP3-213ENST00000559711 DGLUCYQ7Z3D6 616 aa12□□□□□ -0.49
USP3-213ENST00000559711 SPRED1Q7Z699 444 aa12□□□□□ -0.49
USP3-213ENST00000559711 RNF130Q86XS8 419 aa12□□□□□ -0.49
USP3-213ENST00000559711 GALNT4Q8N4A0 578 aa12□□□□□ -0.49
USP3-213ENST00000559711 C19orf47Q8N9M1 422 aaKnown RBP12□□□□□ -0.49
USP3-213ENST00000559711 OR5AK3PQ8NH89 298 aa12□□□□□ -0.49
USP3-213ENST00000559711 C9orf16Q9BUW7 83 aa12□□□□□ -0.49
USP3-213ENST00000559711 NTN4Q9HB63 628 aa12□□□□□ -0.49
USP3-213ENST00000559711 FAM60AQ9NP50 221 aa12□□□□□ -0.49
USP3-213ENST00000559711 EPHA6Q9UF33 1036 aa12□□□□□ -0.49
USP3-213ENST00000559711 RAPGEFL1Q9UHV5 662 aa12□□□□□ -0.49
USP3-213ENST00000559711 ZNF639Q9UID6 485 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms