RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 PCDHGA6Q9Y5G7 932 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 APC2O95996 2303 aa8.72□□□□□ -1.01
LDLR-210ENST00000559340 ATP6AP2A0A1C7CYW4 349 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 VSTM2BA6NLU5 285 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 PROM1O43490 865 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 PRMT3O60678 531 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 CTNSO60931 367 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 EEDO75530 441 aaKnown RBP8.71□□□□□ -1.02
LDLR-210ENST00000559340 ATP6AP2O75787 350 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 ZGLP1P0C6A0 271 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 NR2F6P10588 404 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 PTPN4P29074 926 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 TPP2P29144 1249 aaPredicted RBP8.71□□□□□ -1.02
LDLR-210ENST00000559340 IDH3AP50213 366 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 ARFIP2P53365 341 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 EMP2P54851 167 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 HSD17B7P56937 341 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 OLR1P78380 273 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 MAT1AQ00266 395 aaKnown RBP8.71□□□□□ -1.02
LDLR-210ENST00000559340 TNFRSF17Q02223 184 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 ACTN3Q08043 901 aaPredicted RBP8.71□□□□□ -1.02
LDLR-210ENST00000559340 C2orf80Q0P641 193 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 SERTAD2Q14140 314 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 SSPNQ14714 243 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 KIAA0040Q15053 153 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 NKG7Q16617 165 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 GSTA3Q16772 222 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 IL23RQ5VWK5 629 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 METTL21CQ5VZV1 264 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 OGFOD2Q6N063 350 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 FAM199XQ6PEV8 388 aaPredicted RBP8.71□□□□□ -1.02
LDLR-210ENST00000559340 QSOX2Q6ZRP7 698 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 LARP4Q71RC2 724 aaKnown RBP eCLIP8.71□□□□□ -1.02
LDLR-210ENST00000559340 PRSS41Q7RTY9 318 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 RAB43Q86YS6 212 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 TMEM132CQ8N3T6 1108 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 NATD1Q8N6N6 113 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 ENDOVQ8N8Q3 282 aaKnown RBP8.71□□□□□ -1.02
LDLR-210ENST00000559340 AMER3Q8N944 861 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 OR2Y1Q8NGV0 311 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 OR2T11Q8NH01 316 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 C16orf78Q8WTQ4 265 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.71□□□□□ -1.02
LDLR-210ENST00000559340 TM4SF18Q96CE8 201 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 MAELQ96JY0 434 aaKnown RBP8.71□□□□□ -1.02
LDLR-210ENST00000559340 FCRL1Q96LA6 429 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 PPP1R36Q96LQ0 422 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 C3orf30Q96M34 536 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 ZNF317Q96PQ6 595 aaPredicted RBP8.71□□□□□ -1.02
LDLR-210ENST00000559340 MAPKAP1Q9BPZ7 522 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 PELOQ9BRX2 385 aaKnown RBP8.71□□□□□ -1.02
LDLR-210ENST00000559340 SORBS1Q9BX66 1292 aaKnown RBP8.71□□□□□ -1.02
LDLR-210ENST00000559340 ZNF717Q9BY31 904 aaPredicted RBP8.71□□□□□ -1.02
LDLR-210ENST00000559340 RPF2Q9H7B2 306 aaKnown RBP8.71□□□□□ -1.02
LDLR-210ENST00000559340 NPHS2Q9NP85 383 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 MYNNQ9NPC7 610 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 TCF7L2Q9NQB0 619 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 PRTFDC1Q9NRG1 225 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 SEMA3GQ9NS98 782 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 KCMF1Q9P0J7 381 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 KLHL14Q9P2G3 628 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 ADAM21Q9UKJ8 722 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 LHX6Q9UPM6 363 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 DLGAP4Q9Y2H0 992 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 PTRH2Q9Y3E5 179 aaKnown RBP8.71□□□□□ -1.02
LDLR-210ENST00000559340 POLR3HQ9Y535 204 aaPredicted RBP8.71□□□□□ -1.02
LDLR-210ENST00000559340 ASB4Q9Y574 426 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 PCDHA9Q9Y5H5 950 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 ATRXP46100 2492 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 DOCK10Q96BY6 2186 aa8.71□□□□□ -1.02
LDLR-210ENST00000559340 A0A0G2JND7 137 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 LOC101059948A0A1B0GTJ6 334 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 TEX51A0A1B0GUA7 166 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 C4orf51C9J302 202 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 ZNF195O14628 629 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 UBDO15205 165 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 DYRK3O43781 588 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 TMPRSS11DO60235 418 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 B4GALT2O60909 372 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 B3GALT4O96024 378 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 PRR35P0CG20 571 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 ATXN8OSP0DMR3 200 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 BCKDHAP12694 445 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 IDO1P14902 403 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 PRPS1L1P21108 318 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 PIK3R1P27986 724 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 EPHA3P29320 983 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 HPCAL1P37235 193 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 CLNS1AP54105 237 aaKnown RBP8.7□□□□□ -1.02
LDLR-210ENST00000559340 GYS2P54840 703 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 UCNP55089 124 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 HNRNPH2P55795 449 aaKnown RBP8.7□□□□□ -1.02
LDLR-210ENST00000559340 TAS2R50P59544 299 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 STX1BP61266 288 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 RAE1P78406 368 aaKnown RBP8.7□□□□□ -1.02
LDLR-210ENST00000559340 KLC1Q07866 573 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 STX4Q12846 297 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 SLC13A2Q13183 592 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 SYT16Q17RD7 645 aa8.7□□□□□ -1.02
LDLR-210ENST00000559340 MINDY4Q4G0A6 757 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms