RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 LRRC73Q5JTD7 316 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 AGAP6Q5VW22 663 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 NEPROQ6NW34 567 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 RBPMS2Q6ZRY4 209 aaKnown RBP2.9□□□□□ -1.95
VPS13C-208ENST00000559119 ENTHD1Q8IYW4 607 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 APCDD1Q8J025 514 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 ZNF564Q8TBZ8 553 aaPredicted RBP2.9□□□□□ -1.95
VPS13C-208ENST00000559119 CD99L2Q8TCZ2 262 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 SMPDL3AQ92484 453 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 CCDC94Q9BW85 323 aaPredicted RBP2.9□□□□□ -1.95
VPS13C-208ENST00000559119 MOKQ9UQ07 419 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 SH3GLB1Q9Y371 365 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 NCOA1Q15788 1441 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 MYOM3Q5VTT5 1437 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 AKNAQ7Z591 1439 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 SYNJ1O43426 1573 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 MROH2BQ7Z745 1585 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 ABCA5Q8WWZ7 1642 aa2.9□□□□□ -1.95
VPS13C-208ENST00000559119 KTN1Q86UP2 1357 aaKnown RBP2.89□□□□□ -1.95
VPS13C-208ENST00000559119 IBTKQ9P2D0 1353 aaPredicted RBP2.89□□□□□ -1.95
VPS13C-208ENST00000559119 ZMYM4Q5VZL5 1548 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 EPOPA6NHQ4 379 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 ZNF732B4DXR9 585 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 PRSS46E5RG02 174 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 STAM2O75886 525 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 PGAM2P15259 253 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 HSPA4P34932 840 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 GSTO1P78417 241 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 CCDC173Q0VFZ6 552 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 CNPY1Q3B7I2 92 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 CCDC184Q52MB2 194 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 ZNF544Q6NX49 715 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 C17orf107Q6ZR85 190 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 CENPQQ7L2Z9 268 aaPredicted RBP2.89□□□□□ -1.95
VPS13C-208ENST00000559119 ZSCAN30Q86W11 494 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 FBXO16Q8IX29 292 aaPredicted RBP2.89□□□□□ -1.95
VPS13C-208ENST00000559119 SLC43A2Q8N370 569 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 CLEC1AQ8NC01 280 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 EXOC6Q8TAG9 804 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 AK8Q96MA6 479 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 CHMP4BQ9H444 224 aaKnown RBP2.89□□□□□ -1.95
VPS13C-208ENST00000559119 C5orf66Q9H5L9 145 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 GRPEL1Q9HAV7 217 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 KCNMB3Q9NPA1 279 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 ARAP1Q96P48 1450 aa2.89□□□□□ -1.95
VPS13C-208ENST00000559119 TOP2AP11388 1531 aaKnown RBP2.88□□□□□ -1.95
VPS13C-208ENST00000559119 KDM5BQ9UGL1 1544 aa2.88□□□□□ -1.95
VPS13C-208ENST00000559119 LRPPRCP42704 1394 aaKnown RBP2.88□□□□□ -1.95
VPS13C-208ENST00000559119 TONSLQ96HA7 1378 aa2.88□□□□□ -1.95
VPS13C-208ENST00000559119 CCDC7Q96M83 1385 aa2.88□□□□□ -1.95
VPS13C-208ENST00000559119 MCF2LO15068 1137 aa2.88□□□□□ -1.95
VPS13C-208ENST00000559119 CASP2P42575 452 aa2.88□□□□□ -1.95
VPS13C-208ENST00000559119 CDX1P47902 265 aaPredicted RBP2.88□□□□□ -1.95
VPS13C-208ENST00000559119 MAPRE1Q15691 268 aaKnown RBP2.88□□□□□ -1.95
VPS13C-208ENST00000559119 TAZQ16635 292 aa2.88□□□□□ -1.95
VPS13C-208ENST00000559119 GPR139Q6DWJ6 353 aa2.88□□□□□ -1.95
VPS13C-208ENST00000559119 CCDC71Q8IV32 467 aaPredicted RBP2.88□□□□□ -1.95
VPS13C-208ENST00000559119 FAM9BQ8IZU0 186 aa2.88□□□□□ -1.95
VPS13C-208ENST00000559119 ELMOD1Q8N336 334 aa2.88□□□□□ -1.95
VPS13C-208ENST00000559119 FAF2Q96CS3 445 aa2.88□□□□□ -1.95
VPS13C-208ENST00000559119 TSPYL1Q9H0U9 437 aa2.88□□□□□ -1.95
VPS13C-208ENST00000559119 YY1AP1Q9H869 796 aa2.88□□□□□ -1.95
VPS13C-208ENST00000559119 UACAQ9BZF9 1416 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 CCT8L1PA6NM43 557 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 NEDD8-MDP1E9PL57 170 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 SAP18O00422 153 aaKnown RBP2.87□□□□□ -1.95
VPS13C-208ENST00000559119 ACTL6AO96019 429 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 NR2F1P10589 423 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 HSPA5P11021 654 aaKnown RBP2.87□□□□□ -1.95
VPS13C-208ENST00000559119 MDKP21741 143 aaPredicted RBP2.87□□□□□ -1.95
VPS13C-208ENST00000559119 PSMA3P25788 255 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 MAGEA9P43362 315 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 CXCL6P80162 114 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 CST9LP1Q5W188 147 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 SASS6Q6UVJ0 657 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 ABRAXAS1Q6UWZ7 409 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 PLPPR4Q7Z2D5 763 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 RMDN2Q96LZ7 410 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 CCT8L2Q96SF2 557 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 UBQLN3Q9H347 655 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 AMBNQ9NP70 447 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 TERF2IPQ9NYB0 399 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 SENP1Q9P0U3 644 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 NOL7Q9UMY1 257 aaKnown RBP2.87□□□□□ -1.95
VPS13C-208ENST00000559119 MTF2Q9Y483 593 aaPredicted RBP2.87□□□□□ -1.95
VPS13C-208ENST00000559119 UNC13AQ9UPW8 1703 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 BRD4O60885 1362 aaPredicted RBP2.87□□□□□ -1.95
VPS13C-208ENST00000559119 ROCK2O75116 1388 aaKnown RBP2.87□□□□□ -1.95
VPS13C-208ENST00000559119 NINLQ9Y2I6 1382 aa2.87□□□□□ -1.95
VPS13C-208ENST00000559119 ARHGAP31Q2M1Z3 1444 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 SPATA31E1Q6ZUB1 1445 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 WIZO95785 1651 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 CCDC18Q5T9S5 1454 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 CECR2Q9BXF3 1484 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 PRXQ9BXM0 1461 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 RAPGEF2Q9Y4G8 1499 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 C2orf92A0A1B0GVN3 265 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 FRG2CA6NGY1 282 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 ZNF724A8MTY0 619 aa2.86□□□□□ -1.95
VPS13C-208ENST00000559119 DIAPH2O60879 1101 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms