RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 TBRG1Q3YBR2 411 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 GLYR1Q49A26 553 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-231ENST00000557433 MFSD4BQ5TF39 518 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 HIST2H2AA3Q6FI13 130 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 COMMD6Q7Z4G1 85 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 TMEM150AQ86TG1 271 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 SLC34A3Q8N130 599 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 SLC43A3Q8NBI5 491 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 PSD4Q8NDX1 1056 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 GPR156Q8NFN8 814 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 SLC7A6Q92536 515 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 AP3S1Q92572 193 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 PDXPQ96GD0 296 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 RIPOR3Q96MK2 946 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 SYT17Q9BSW7 474 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 TRAF4Q9BUZ4 470 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-231ENST00000557433 MCOLN1Q9GZU1 580 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 ANAPC1Q9H1A4 1944 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 REV1Q9UBZ9 1251 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 MBD1Q9UIS9 605 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-231ENST00000557433 RAB23Q9ULC3 237 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 ICKQ9UPZ9 632 aa15.54■□□□□ 0.08
SHMT2-231ENST00000557433 M0R129 80 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 TPST2O60704 377 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 ALX3O95076 343 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 ADRA2AP08913 450 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 IMPA1P29218 277 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 SLC5A12Q1EHB4 618 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 BRAT1Q6PJG6 821 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 RFLNAQ6ZTI6 216 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 DDX53Q86TM3 631 aaKnown RBP15.53■□□□□ 0.08
SHMT2-231ENST00000557433 GATAD2AQ86YP4 633 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 LIX1LQ8IVB5 337 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 HS6ST3Q8IZP7 471 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 ARL14EPQ8N8R7 260 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-231ENST00000557433 C16orf78Q8WTQ4 265 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 GDF15Q99988 308 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 ZSCAN5AQ9BUG6 496 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 PRM3Q9NNZ6 103 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 A4GALTQ9NPC4 353 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 ISYNA1Q9NPH2 558 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 HCSTQ9UBK5 93 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 MAFFQ9ULX9 164 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 NUP214P35658 2090 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-231ENST00000557433 ALPK3Q96L96 1907 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 A0A1W2PQ09 198 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 A0A1W2PRB8 838 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 PITPNM1O00562 1244 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 MYL12BO14950 172 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 ATG13O75143 517 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 PRKAR2AP13861 404 aaKnown RBP15.53■□□□□ 0.08
SHMT2-231ENST00000557433 HLA-DMAP28067 261 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 VIPR1P32241 457 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 CD70P32970 193 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 WDR5P61964 334 aaKnown RBP15.53■□□□□ 0.08
SHMT2-231ENST00000557433 C2orf80Q0P641 193 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 BAK1Q16611 211 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 NDUFA9Q16795 377 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 DCST1Q5T197 706 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 NOXA1Q86UR1 476 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 CRIPAKQ8N1N5 446 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 LINC00471Q8N535 108 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 DBF4BQ8NFT6 615 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 APOBEC4Q8WW27 367 aaKnown RBP15.53■□□□□ 0.08
SHMT2-231ENST00000557433 UBE2E3Q969T4 207 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 NEDD4LQ96PU5 975 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 PKP4Q99569 1192 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 NLNQ9BYT8 704 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 POLR2J2Q9GZM3 115 aaKnown RBP15.53■□□□□ 0.08
SHMT2-231ENST00000557433 DMRT3Q9NQL9 472 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 SNTG1Q9NSN8 517 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 TBC1D14Q9P2M4 693 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 SLC25A13Q9UJS0 675 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 SLC6A14Q9UN76 642 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 DIMT1Q9UNQ2 313 aaKnown RBP15.53■□□□□ 0.08
SHMT2-231ENST00000557433 DYRK1BQ9Y463 629 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 MAP4K5Q9Y4K4 846 aa15.53■□□□□ 0.08
SHMT2-231ENST00000557433 SLC5A10A0PJK1 596 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 STK25O00506 426 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 POU1F1P28069 291 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 GSTM5P46439 218 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 HYAL2Q12891 473 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 TP53BP2Q13625 1128 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 GANABQ14697 944 aaKnown RBP15.52■□□□□ 0.07
SHMT2-231ENST00000557433 GPAT3Q53EU6 434 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 DDI2Q5TDH0 399 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 TIGD3Q6B0B8 471 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 KIAA1211LQ6NV74 962 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 VASH1Q7L8A9 365 aaPredicted RBP15.52■□□□□ 0.07
SHMT2-231ENST00000557433 LAX1Q8IWV1 398 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 PHC2Q8IXK0 858 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 FAM26EQ8N5C1 309 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 LMLNQ96KR4 655 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 SLC22A12Q96S37 553 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 TMEM246Q9BRR3 403 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 GON7Q9BXV9 100 aa15.52■□□□□ 0.07
SHMT2-231ENST00000557433 KRT87PA6NCN2 255 aa15.51■□□□□ 0.07
SHMT2-231ENST00000557433 WASH3PC4AMC7 463 aa15.51■□□□□ 0.07
SHMT2-231ENST00000557433 C5orf58C9J3I9 102 aa15.51■□□□□ 0.07
SHMT2-231ENST00000557433 GRM6O15303 877 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms