RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 H0Y8X5 98 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 CHRM5P08912 532 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-229ENST00000557348 PSMB5P28074 263 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 BSGP35613 385 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 CDKN2CP42773 168 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 RPS9P46781 194 aaKnown RBP12.05□□□□□ -0.48
SHMT2-229ENST00000557348 STXBP1P61764 594 aaKnown RBP12.05□□□□□ -0.48
SHMT2-229ENST00000557348 VMACQ2NL98 169 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 ADPRMQ3LIE5 342 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 GTDC1Q4AE62 458 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 FGD3Q5JSP0 725 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 PTCRAQ6ISU1 281 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-229ENST00000557348 TRIM40Q6P9F5 258 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 TUBA3EQ6PEY2 450 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 ZNF687Q8N1G0 1237 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 PARP8Q8N3A8 854 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 WDR48Q8TAF3 677 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 GPBAR1Q8TDU6 330 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 NUDT8Q8WV74 236 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 TSACCQ96A04 125 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-229ENST00000557348 SDCCAG3Q96C92 435 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 OSBPL10Q9BXB5 764 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 ROGDIQ9GZN7 287 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 SEMA6AQ9H2E6 1030 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 CHRDQ9H2X0 955 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 PIF1Q9H611 641 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 C6orf106Q9H6K1 298 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-229ENST00000557348 LMAN1LQ9HAT1 526 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 FBXO8Q9NRD0 319 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 AASDHPPTQ9NRN7 309 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 ZSCAN32Q9NX65 697 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 TAS2R9Q9NYW1 312 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 ERVK-11Q9UQG0 969 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 PCDHGB1Q9Y5G3 927 aa12.05□□□□□ -0.48
SHMT2-229ENST00000557348 SPTY2D1-AS1A0A0U1RR47 76 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 ISM1B1AKI9 464 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 CENPBD1B2RD01 187 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 SH3BGRLO75368 114 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 GSNP06396 782 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 IL3P08700 152 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 GSTT2P0CG29 244 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 GSTT2BP0CG30 244 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 STARD6P59095 220 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 ANKDD1AQ495B1 522 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 IER5LQ5T953 404 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 GTF2IRD2BQ6EKJ0 949 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 ZNF425Q6IV72 752 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 Q6ZS52 159 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 RD3Q7Z3Z2 195 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 GTF2IRD2Q86UP8 949 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 ANKRD13BQ86YJ7 626 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 SVOPLQ8N434 492 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 SLC15A4Q8N697 577 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 MFSD9Q8NBP5 474 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 CREB3L4Q8TEY5 395 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 ZFP90Q8TF47 636 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 SLC47A1Q96FL8 570 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 SH3YL1Q96HL8 342 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-229ENST00000557348 KCNC2Q96PR1 638 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 DPH7Q9BTV6 452 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 TBCDQ9BTW9 1192 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 TWSG1Q9GZX9 223 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 TMEM168Q9H0V1 697 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 XKR8Q9H6D3 395 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 NECTIN3Q9NQS3 549 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 SLC6A13Q9NSD5 602 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 TAS2R7Q9NYW3 318 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 DNAJB9Q9UBS3 223 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 KLF15Q9UIH9 416 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 UGT2A1Q9Y4X1 527 aa12.04□□□□□ -0.48
SHMT2-229ENST00000557348 MN1Q10571 1320 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-229ENST00000557348 A0A1W2PRB8 838 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 KRBA1A5PL33 1030 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 LRIT2A6NDA9 550 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 URADA6NGE7 173 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 SAP18O00422 153 aaKnown RBP12.03□□□□□ -0.48
SHMT2-229ENST00000557348 ACOX3O15254 700 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 PRSS23O95084 383 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 VIPP01282 170 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 ALBP02768 609 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 CD72P21854 359 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 SSR2P43308 183 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 GSSP48637 474 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 CDH15P55291 814 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 CYP4F2P78329 520 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 RGS1Q08116 209 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 BNIP3Q12983 259 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 IL18R1Q13478 541 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 SPCS2Q15005 226 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 PLCL1Q15111 1095 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 RGNQ15493 299 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 ZIC1Q15915 447 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 CYBRD1Q53TN4 286 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 OR4C11Q6IEV9 310 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 ZCCHC8Q6NZY4 707 aaKnown RBP12.03□□□□□ -0.48
SHMT2-229ENST00000557348 IGFN1Q86VF2 1251 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 IQCHQ86VS3 1027 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 PARGQ86W56 976 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 ADHFE1Q8IWW8 467 aa12.03□□□□□ -0.48
SHMT2-229ENST00000557348 CLECL1Q8IZS7 167 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms