RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 FBXW2Q9UKT8 454 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 PCDHGA9Q9Y5G4 932 aaKnown RBP12.77□□□□□ -0.37
SHMT2-228ENST00000557302 CFAP46Q8IYW2 2715 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 MED13Q9UHV7 2174 aa12.77□□□□□ -0.37
SHMT2-228ENST00000557302 IGKV3D-11A0A0A0MRZ8 115 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 A0A0A6YYD5 115 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 ARHGAP10A1A4S6 786 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 BIRC5O15392 142 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 SEC24DO94855 1032 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-228ENST00000557302 UROSP10746 265 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 TLX1P31314 330 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-228ENST00000557302 SERPINB5P36952 375 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 PGDP52209 483 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 HNRNPFP52597 415 aaKnown RBP12.76□□□□□ -0.37
SHMT2-228ENST00000557302 FOXA1P55317 472 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 MAGOHP61326 146 aaKnown RBP12.76□□□□□ -0.37
SHMT2-228ENST00000557302 RAPSNQ13702 412 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 MYBPC3Q14896 1274 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 LACTB2Q53H82 288 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-228ENST00000557302 TCTN3Q6NUS6 607 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 ZCCHC23Q6ZST2 131 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 HDXQ7Z353 690 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 CUZD1Q86UP6 607 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 KBTBD2Q8IY47 623 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 METTL4Q8N3J2 472 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 TMEM52Q8NDY8 209 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 FDCSPQ8NFU4 85 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 PPP1R14CQ8TAE6 165 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 TLCD1Q96CP7 247 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 PKNOX2Q96KN3 472 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 LPAR4Q99677 370 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 LHPPQ9H008 270 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 EML4Q9HC35 981 aaKnown RBP12.76□□□□□ -0.37
SHMT2-228ENST00000557302 TNFRSF12AQ9NP84 129 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 NECTIN3Q9NQS3 549 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 ZNF71Q9NQZ8 489 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-228ENST00000557302 VPS29Q9UBQ0 182 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 ADAM29Q9UKF5 820 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 TP53TG5Q9Y2B4 290 aa12.76□□□□□ -0.37
SHMT2-228ENST00000557302 TCRBV16S1A1N1A0A5B0 115 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 WDR91A4D1P6 747 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 SYNDIG1LA6NDD5 238 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 AZIN1O14977 448 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 TMPRSS11DO60235 418 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 CTNSO60931 367 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 GBAP04062 536 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 ALPPP05187 535 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 SERPINA7P05543 415 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 KLK1P06870 262 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 FAM58BPP0C7Q3 252 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 DHRS4L1P0CG22 281 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 ICAM2P13598 275 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 SERPINB3P29508 390 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 BUD31P41223 144 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-228ENST00000557302 HNRNPH2P55795 449 aaKnown RBP12.75□□□□□ -0.37
SHMT2-228ENST00000557302 AP2B1P63010 937 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 HMGCS1Q01581 520 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 TNFRSF17Q02223 184 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 Q0VFX4 171 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 GALNT1Q10472 559 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-228ENST00000557302 TBL3Q12788 808 aaKnown RBP12.75□□□□□ -0.37
SHMT2-228ENST00000557302 MPP2Q14168 576 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 ARL13AQ5H913 290 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-228ENST00000557302 CCNYL2Q5T2Q4 361 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 VWA5B1Q5TIE3 1220 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 NUP210LQ5VU65 1888 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 MRM1Q6IN84 353 aaKnown RBP12.75□□□□□ -0.37
SHMT2-228ENST00000557302 PAPD4Q6PIY7 484 aaKnown RBP12.75□□□□□ -0.37
SHMT2-228ENST00000557302 SCIMPQ6UWF3 145 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 RIPOR1Q6ZS17 1223 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 COMMD6Q7Z4G1 85 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 CLNKQ7Z7G1 428 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 ANKRD42Q8N9B4 389 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 THOC3Q96J01 351 aaKnown RBP12.75□□□□□ -0.37
SHMT2-228ENST00000557302 IMMP1LQ96LU5 166 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 WDR77Q9BQA1 342 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-228ENST00000557302 NUDT9Q9BW91 350 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 ACPTQ9BZG2 426 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 MLXIPLQ9NP71 852 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 ATG4BQ9Y4P1 393 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 ASB4Q9Y574 426 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 PCDHGB7Q9Y5F8 929 aa12.75□□□□□ -0.37
SHMT2-228ENST00000557302 TMEM120BA0PK00 339 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 SERTM1A2A2V5 107 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 K7EM74 188 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 PROM1O43490 865 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 CHEK2O96017 543 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 CHRNGP07510 517 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 PRR35P0CG20 571 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 NR2F6P10588 404 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 CHN1P15882 459 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 TPP2P29144 1249 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-228ENST00000557302 MAPK12P53778 367 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 STX4Q12846 297 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 EXT1Q16394 746 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 IMPG1Q17R60 797 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 BTBD16Q32M84 506 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 AGBL2Q5U5Z8 902 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 HHATQ5VTY9 493 aa12.74□□□□□ -0.37
SHMT2-228ENST00000557302 PLAG1Q6DJT9 500 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms