RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 PAFAH2Q99487 392 aa11.05□□□□□ -0.64
VRK1-204ENST00000555351 ACTR8Q9H981 624 aa11.05□□□□□ -0.64
VRK1-204ENST00000555351 PHF11Q9UIL8 331 aa11.05□□□□□ -0.64
VRK1-204ENST00000555351 CLCA3PQ9Y6N3 262 aa11.05□□□□□ -0.64
VRK1-204ENST00000555351 TGFBR3LH3BV60 316 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 FOXE1O00358 373 aaPredicted RBP11.04□□□□□ -0.64
VRK1-204ENST00000555351 LRRTM2O43300 516 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 NME2P1O60361 137 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 MAN1A2O60476 641 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 SLC25A12O75746 678 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 ZFAND5O76080 213 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 ACSL3O95573 720 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 TGFB1P01137 390 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 RNF224P0DH78 156 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 PCNAP12004 261 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 NME2P22392 152 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 MST1P26927 711 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 SSR2P43308 183 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 HNRNPFP52597 415 aaKnown RBP11.04□□□□□ -0.64
VRK1-204ENST00000555351 IGLV3-21P80748 117 aaPredicted RBP11.04□□□□□ -0.64
VRK1-204ENST00000555351 GTF2H2Q13888 395 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 LGSNQ5TDP6 509 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 SPINK14Q6IE38 97 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 GTF2H2CQ6P1K8 395 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 ZNF793Q6ZN11 406 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 BNC2Q6ZN30 1099 aaPredicted RBP11.04□□□□□ -0.64
VRK1-204ENST00000555351 TRMT10CQ7L0Y3 403 aaKnown RBP11.04□□□□□ -0.64
VRK1-204ENST00000555351 AMER2Q8N7J2 671 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 FAM47BQ8NA70 645 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 TMEM52Q8NDY8 209 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 HUS1BQ8NHY5 278 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 TANKQ92844 425 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 TMEM125Q96AQ2 219 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 MRRFQ96E11 262 aaKnown RBP11.04□□□□□ -0.64
VRK1-204ENST00000555351 FRMD6Q96NE9 622 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 NTMT1Q9BV86 223 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 VPS11Q9H270 941 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 IPPKQ9H8X2 491 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 DMRT3Q9NQL9 472 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 PNO1Q9NRX1 252 aaKnown RBP11.04□□□□□ -0.64
VRK1-204ENST00000555351 FETUBQ9UGM5 382 aa11.04□□□□□ -0.64
VRK1-204ENST00000555351 KLF13Q9Y2Y9 288 aaPredicted RBP11.04□□□□□ -0.64
VRK1-204ENST00000555351 YARS2Q9Y2Z4 477 aaKnown RBP11.04□□□□□ -0.64
VRK1-204ENST00000555351 UTP20O75691 2785 aaKnown RBP11.04□□□□□ -0.64
VRK1-204ENST00000555351 SPTBN1Q01082 2364 aaKnown RBP11.03□□□□□ -0.64
VRK1-204ENST00000555351 TRBV11-1A0A0K0K1C0 115 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 CYSRT1A8MQ03 144 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 SEMA3DO95025 777 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 UNC5CO95185 931 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 CLDN9O95484 217 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 SNRPAP09012 282 aaKnown RBP11.03□□□□□ -0.64
VRK1-204ENST00000555351 TLX1P31314 330 aaPredicted RBP11.03□□□□□ -0.64
VRK1-204ENST00000555351 RAP1GDS1P52306 607 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 STX4Q12846 297 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 ZRSR2Q15696 482 aaKnown RBP11.03□□□□□ -0.64
VRK1-204ENST00000555351 GALNTL5Q7Z4T8 443 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 GOLGA7Q7Z5G4 137 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 ZNF227Q86WZ6 799 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 IFT20Q8IY31 132 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 SLC34A3Q8N130 599 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 PLD6Q8N2A8 252 aaKnown RBP11.03□□□□□ -0.64
VRK1-204ENST00000555351 EIF1ADQ8N9N8 165 aaKnown RBP11.03□□□□□ -0.64
VRK1-204ENST00000555351 MYRIPQ8NFW9 859 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 PTPMT1Q8WUK0 201 aaPredicted RBP11.03□□□□□ -0.64
VRK1-204ENST00000555351 DCAKDQ8WVC6 231 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 NCLNQ969V3 563 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 MTBPQ96DY7 904 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 GPR137Q96N19 417 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 CSF3RQ99062 836 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 MAPKAP1Q9BPZ7 522 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 MRPL57Q9BQC6 102 aaKnown RBP11.03□□□□□ -0.64
VRK1-204ENST00000555351 PELOQ9BRX2 385 aaKnown RBP11.03□□□□□ -0.64
VRK1-204ENST00000555351 C1QTNF3Q9BXJ4 246 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 ALOXE3Q9BYJ1 711 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 DDX31Q9H8H2 851 aaKnown RBP11.03□□□□□ -0.64
VRK1-204ENST00000555351 LYARQ9NX58 379 aaKnown RBP11.03□□□□□ -0.64
VRK1-204ENST00000555351 CPSF2Q9P2I0 782 aaKnown RBP11.03□□□□□ -0.64
VRK1-204ENST00000555351 ZNF223Q9UK11 482 aaPredicted RBP11.03□□□□□ -0.64
VRK1-204ENST00000555351 ZNF835Q9Y2P0 537 aa11.03□□□□□ -0.64
VRK1-204ENST00000555351 A8MUA0 341 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 KLRC4-KLRK1H3BQV0 150 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 PLPP1O14494 284 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 DYRK3O43781 588 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 SMIM24O75264 130 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 ITGA10O75578 1167 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 CLDN1O95832 211 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 IFNA16P05015 189 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 COX7A2P14406 83 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 CPN2P22792 545 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 GALNSP34059 522 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 BUD31P41223 144 aaPredicted RBP11.02□□□□□ -0.65
VRK1-204ENST00000555351 CA7P43166 264 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 CASP6P55212 293 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 KCNK10P57789 538 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 TNFRSF17Q02223 184 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 ALDH6A1Q02252 535 aaKnown RBP11.02□□□□□ -0.65
VRK1-204ENST00000555351 SLAMF1Q13291 335 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 MAPKAPK3Q16644 382 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 GGTA1PQ4G0N0 100 aa11.02□□□□□ -0.65
VRK1-204ENST00000555351 UBAP2Q5T6F2 1119 aaKnown RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms