RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 KIF16BQ96L93 1317 aa5.2□□□□□ -1.58
SCFD1-208ENST00000553278 EME2A4GXA9 379 aaPredicted RBP5.19□□□□□ -1.58
SCFD1-208ENST00000553278 SERINC4A6NH21 518 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 SRRM3A6NNA2 597 aaPredicted RBP5.19□□□□□ -1.58
SCFD1-208ENST00000553278 YJEFN3A6XGL0 299 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 DFFBO76075 338 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 KIAA0754O94854 1291 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 OR4F21O95013 312 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 AXLP30530 894 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 NAPAP54920 295 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 DRP2Q13474 957 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 KLF9Q13886 244 aaPredicted RBP5.19□□□□□ -1.58
SCFD1-208ENST00000553278 MEF2DQ14814 521 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 POM121L1PQ3SYA9 428 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 LIPJQ5W064 366 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 CDC42EP5Q6NZY7 148 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 CWC27Q6UX04 472 aaKnown RBP5.19□□□□□ -1.58
SCFD1-208ENST00000553278 UNQ6126/PRO20091Q6UXV3 157 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 RFPL4BQ6ZWI9 263 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 CREB3L2Q70SY1 520 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 FCRLAQ7L513 359 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 FAM89BQ8N5H3 189 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 EIF1ADQ8N9N8 165 aaKnown RBP5.19□□□□□ -1.58
SCFD1-208ENST00000553278 RLN3Q8WXF3 142 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 PHF21BQ96EK2 531 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 SCRN2Q96FV2 425 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 WRAP53Q9BUR4 548 aaKnown RBP5.19□□□□□ -1.58
SCFD1-208ENST00000553278 FAM124BQ9H5Z6 455 aaPredicted RBP5.19□□□□□ -1.58
SCFD1-208ENST00000553278 EGLN3Q9H6Z9 239 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 LRRC4Q9HBW1 653 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 TM9SF3Q9HD45 589 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 NMRK1Q9NWW6 199 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 ELOVL5Q9NYP7 299 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 FLRT3Q9NZU0 649 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 DBF4Q9UBU7 674 aaPredicted RBP5.19□□□□□ -1.58
SCFD1-208ENST00000553278 EPHA6Q9UF33 1036 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 ELF5Q9UKW6 265 aaPredicted RBP5.19□□□□□ -1.58
SCFD1-208ENST00000553278 GRID1Q9ULK0 1009 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 FOXJ3Q9UPW0 622 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 TTC3P53804 2025 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 SF3B1O75533 1304 aaKnown RBP eCLIP5.19□□□□□ -1.58
SCFD1-208ENST00000553278 ZMYM6O95789 1325 aa5.19□□□□□ -1.58
SCFD1-208ENST00000553278 EVPLQ92817 2033 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 TNFSF12-TNFSF13A0A0A6YY99 330 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 IGLV9-49A0A0B4J1Y8 123 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 A0A1W2PS18 150 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 MTMR11A4FU01 709 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 CLEC18AA5D8T8 446 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 SGK1O00141 431 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 CYR61O00622 381 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 CCSO14618 274 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 MLNRO43193 412 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 CDK2AP2O75956 126 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 CRYABP02511 175 aaKnown RBP5.18□□□□□ -1.58
SCFD1-208ENST00000553278 SFTPCP11686 197 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 PTPN4P29074 926 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 PEX19P40855 299 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 PTGFRP43088 359 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 PTGER3P43115 390 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 SLC1A6P48664 564 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 LIMK2P53671 638 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 DVL1P1P54792 670 aaPredicted RBP5.18□□□□□ -1.58
SCFD1-208ENST00000553278 CNTN1Q12860 1018 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 ZMYND11Q15326 602 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 OR1C1Q15619 314 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 ETFDHQ16134 617 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 ANKRD55Q3KP44 614 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 XKR6Q5GH73 641 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 SLC25A53Q5H9E4 307 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 PLPP4Q5VZY2 271 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 ZNF852Q6ZMS4 543 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 VPS36Q86VN1 386 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 SLC22A16Q86VW1 577 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 C17orf64Q86WR6 236 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 FAM131BQ86XD5 332 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 GRAMD2AQ8IUY3 354 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 TEX26Q8N6G2 289 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 ZNF383Q8NA42 475 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 CLEC18CQ8NCF0 446 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 OR13C2Q8NGS9 318 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 RNF139Q8WU17 664 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 LMLNQ96KR4 655 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 NEDD4LQ96PU5 975 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 ZBTB18Q99592 522 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 PSD2Q9BQI7 771 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 RDH8Q9NYR8 311 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 C6orf203Q9P0P8 240 aaPredicted RBP5.18□□□□□ -1.58
SCFD1-208ENST00000553278 LHX3Q9UBR4 397 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 DIMT1Q9UNQ2 313 aaKnown RBP5.18□□□□□ -1.58
SCFD1-208ENST00000553278 CUX2O14529 1486 aa5.18□□□□□ -1.58
SCFD1-208ENST00000553278 KRT86O43790 486 aa5.17□□□□□ -1.58
SCFD1-208ENST00000553278 ECE2O60344 883 aa5.17□□□□□ -1.58
SCFD1-208ENST00000553278 TOMM40O96008 361 aa5.17□□□□□ -1.58
SCFD1-208ENST00000553278 UGT2B4P06133 528 aa5.17□□□□□ -1.58
SCFD1-208ENST00000553278 IQCF3P0C7M6 154 aa5.17□□□□□ -1.58
SCFD1-208ENST00000553278 TOP1P11387 765 aaKnown RBP5.17□□□□□ -1.58
SCFD1-208ENST00000553278 LIFP15018 202 aa5.17□□□□□ -1.58
SCFD1-208ENST00000553278 NUCB2P80303 420 aa5.17□□□□□ -1.58
SCFD1-208ENST00000553278 MFGE8Q08431 387 aaPredicted RBP5.17□□□□□ -1.58
SCFD1-208ENST00000553278 DDX39BQ13838 428 aaKnown RBP5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms