RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 MMP10P09238 476 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 TPBGLP0DKB5 382 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 CCDC192P0DO97 292 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 ZNF18P17022 549 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 GPX3P22352 226 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 SFNP31947 248 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 STIP1P31948 543 aaKnown RBP3.51□□□□□ -1.85
VPS29-205ENST00000548539 GPR183P32249 361 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 NSFP46459 744 aaKnown RBP3.51□□□□□ -1.85
VPS29-205ENST00000548539 RABIFP47224 123 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 GEMP55040 296 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 STARD6P59095 220 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 MSLNQ13421 630 aaPredicted RBP3.51□□□□□ -1.85
VPS29-205ENST00000548539 TMEM30BQ3MIR4 351 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 EPC2Q52LR7 807 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 TAF1BQ53T94 588 aaPredicted RBP3.51□□□□□ -1.85
VPS29-205ENST00000548539 WLSQ5T9L3 541 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 BSPRYQ5W0U4 402 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 CAPN13Q6MZZ7 669 aaPredicted RBP3.51□□□□□ -1.85
VPS29-205ENST00000548539 ISLR2Q6UXK2 745 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 WDR88Q6ZMY6 472 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 CYP4V2Q6ZWL3 525 aaPredicted RBP3.51□□□□□ -1.85
VPS29-205ENST00000548539 ZER1Q7Z7L7 766 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 CACUL1Q86Y37 369 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 WDR49Q8IV35 697 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 ADAD2Q8NCV1 583 aaKnown RBP3.51□□□□□ -1.85
VPS29-205ENST00000548539 OR9Q2Q8NGE9 314 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 OR4L1Q8NH43 312 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 CHURC1Q8WUH1 139 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 DUX3Q96PT4 197 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 ZNF300Q96RE9 604 aaPredicted RBP3.51□□□□□ -1.85
VPS29-205ENST00000548539 USP28Q96RU2 1077 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 PKP2Q99959 881 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 FUNDC2Q9BWH2 189 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 NUSAP1Q9BXS6 441 aaKnown RBP3.51□□□□□ -1.85
VPS29-205ENST00000548539 TMEM245Q9H330 911 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 FNDC4Q9H6D8 234 aaPredicted RBP3.51□□□□□ -1.85
VPS29-205ENST00000548539 MARCH7Q9H992 704 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 VIPAS39Q9H9C1 493 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 UBE2TQ9NPD8 197 aaPredicted RBP3.51□□□□□ -1.85
VPS29-205ENST00000548539 B3GAT2Q9NPZ5 323 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 MED17Q9NVC6 651 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 NLGN3Q9NZ94 848 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 NINJ2Q9NZG7 142 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 SPASTQ9UBP0 616 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 COPS7AQ9UBW8 275 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 MRTO4Q9UKD2 239 aaKnown RBP3.51□□□□□ -1.85
VPS29-205ENST00000548539 NUDCQ9Y266 331 aa3.51□□□□□ -1.85
VPS29-205ENST00000548539 RNF103-CHMP3A0A140T963 221 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 BICDL2A1A5D9 508 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 SHISA7A6NL88 538 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 G3V2L1 256 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 RNF103O00237 685 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 ANGPTL1O95841 491 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 ZSCAN5DPP0CG00 497 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 SELEP16581 610 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 CYP3A5P20815 502 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 MAPK3P27361 379 aaPredicted RBP3.5□□□□□ -1.85
VPS29-205ENST00000548539 PDHA2P29803 388 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 CRIP2P52943 208 aaPredicted RBP3.5□□□□□ -1.85
VPS29-205ENST00000548539 GABPAQ06546 454 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 TSTA3Q13630 321 aaPredicted RBP3.5□□□□□ -1.85
VPS29-205ENST00000548539 CCDC6Q16204 474 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 OR6B2Q6IFH4 312 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 MFSD7Q6UXD7 560 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 DLEU7Q6UYE1 221 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 GET4Q7L5D6 327 aaPredicted RBP3.5□□□□□ -1.85
VPS29-205ENST00000548539 MIER3Q7Z3K6 550 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 OR5M9Q8NGP3 310 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 C11orf45Q8TAV5 145 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 SLCO2A1Q92959 643 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 SLCO4A1Q96BD0 722 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 WWP1Q9H0M0 922 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 CXXC4Q9H2H0 198 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 MTHFD2LQ9H903 347 aaPredicted RBP3.5□□□□□ -1.85
VPS29-205ENST00000548539 KCNK13Q9HB14 408 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 KLK11Q9UBX7 282 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 FAM153AQ9UHL3 310 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 NARFQ9UHQ1 456 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 TEKT2Q9UIF3 430 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 TSPAN16Q9UKR8 245 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 MYH14Q7Z406 1995 aaKnown RBP3.5□□□□□ -1.85
VPS29-205ENST00000548539 KIF26BQ2KJY2 2108 aa3.5□□□□□ -1.85
VPS29-205ENST00000548539 CFAP73A6NFT4 308 aa3.49□□□□□ -1.85
VPS29-205ENST00000548539 ARHGAP42A6NI28 874 aa3.49□□□□□ -1.85
VPS29-205ENST00000548539 EEF2KO00418 725 aaKnown RBP3.49□□□□□ -1.85
VPS29-205ENST00000548539 EDIL3O43854 480 aa3.49□□□□□ -1.85
VPS29-205ENST00000548539 CSO75390 466 aaKnown RBP3.49□□□□□ -1.85
VPS29-205ENST00000548539 SFTPBP07988 381 aa3.49□□□□□ -1.85
VPS29-205ENST00000548539 ETS1P14921 441 aa3.49□□□□□ -1.85
VPS29-205ENST00000548539 AOC1P19801 751 aa3.49□□□□□ -1.85
VPS29-205ENST00000548539 MARCKSP29966 332 aaPredicted RBP3.49□□□□□ -1.85
VPS29-205ENST00000548539 HSPA1LP34931 641 aa3.49□□□□□ -1.85
VPS29-205ENST00000548539 ID1P41134 155 aa3.49□□□□□ -1.85
VPS29-205ENST00000548539 ATP12AP54707 1039 aa3.49□□□□□ -1.85
VPS29-205ENST00000548539 PEX3P56589 373 aa3.49□□□□□ -1.85
VPS29-205ENST00000548539 CARTPTQ16568 116 aa3.49□□□□□ -1.85
VPS29-205ENST00000548539 CCDC40Q4G0X9 1142 aa3.49□□□□□ -1.85
VPS29-205ENST00000548539 GPAT3Q53EU6 434 aa3.49□□□□□ -1.85
VPS29-205ENST00000548539 CMPK2Q5EBM0 449 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms