RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 AIF1LQ9BQI0 150 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 NEUROD4Q9HD90 331 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 DEC1Q9P2X7 70 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 KCND3Q9UK17 655 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 STSP08842 583 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 ERGP11308 486 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 CD40LGP29965 261 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 PPP5CP53041 499 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 ST3GAL4Q11206 333 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 PTGES3Q15185 160 aaKnown RBP20.24■□□□□ 0.83
VPS28-205ENST00000526204 ZNF697Q5TEC3 545 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 TUBA3EQ6PEY2 450 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 FAM92BQ6ZTR7 304 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 TAGAPQ8N103 731 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 AMER2Q8N7J2 671 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 PSMA8Q8TAA3 256 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 CXorf40AQ8TE69 158 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 PAWRQ96IZ0 340 aaKnown RBP20.24■□□□□ 0.83
VPS28-205ENST00000526204 SORBS1Q9BX66 1292 aaKnown RBP20.24■□□□□ 0.83
VPS28-205ENST00000526204 PCBD2Q9H0N5 130 aa20.24■□□□□ 0.83
VPS28-205ENST00000526204 TRNAU1APQ9NX07 287 aaKnown RBP20.24■□□□□ 0.83
VPS28-205ENST00000526204 PNMA8BQ9ULN7 279 aaPredicted RBP20.24■□□□□ 0.83
VPS28-205ENST00000526204 PRRC2BQ5JSZ5 2229 aaKnown RBP20.24■□□□□ 0.83
VPS28-205ENST00000526204 EFCAB10A6NFE3 127 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 FGBP02675 491 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 GADD45AP24522 165 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 NUDT6P53370 316 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 MANFP55145 182 aaKnown RBP20.23■□□□□ 0.83
VPS28-205ENST00000526204 COLEC12Q5KU26 742 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 MMP21Q8N119 569 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 AQP11Q8NBQ7 271 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 SP7Q8TDD2 431 aaPredicted RBP20.23■□□□□ 0.83
VPS28-205ENST00000526204 GTPBP3Q969Y2 492 aaKnown RBP20.23■□□□□ 0.83
VPS28-205ENST00000526204 COX14Q96I36 57 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 ACAT2Q9BWD1 397 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 ZBTB20Q9HC78 741 aaPredicted RBP20.23■□□□□ 0.83
VPS28-205ENST00000526204 MS4A12Q9NXJ0 267 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 CNOT2Q9NZN8 540 aaKnown RBP20.23■□□□□ 0.83
VPS28-205ENST00000526204 PLAGL1Q9UM63 463 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 PTPRSQ13332 1948 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 NOTCH4Q99466 2003 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 KRBA1A5PL33 1030 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 CAPN5O15484 640 aaPredicted RBP20.23■□□□□ 0.83
VPS28-205ENST00000526204 CNOT3O75175 753 aaKnown RBP20.23■□□□□ 0.83
VPS28-205ENST00000526204 ADORA3P0DMS8 318 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 IFITM3Q01628 133 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 MESP2Q0VG99 397 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 IRF3Q14653 427 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 GANABQ14697 944 aaKnown RBP20.23■□□□□ 0.83
VPS28-205ENST00000526204 DUSP7Q16829 419 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 ADAMTSL4Q6UY14 1074 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 C2orf73Q8N5S3 287 aaPredicted RBP20.23■□□□□ 0.83
VPS28-205ENST00000526204 KBTBD8Q8NFY9 601 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 TM4SF18Q96CE8 201 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 ITPKCQ96DU7 683 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 PITHD1Q9GZP4 211 aaPredicted RBP20.23■□□□□ 0.83
VPS28-205ENST00000526204 WASH6PQ9NQA3 447 aa20.23■□□□□ 0.83
VPS28-205ENST00000526204 LAMA2P24043 3122 aaKnown RBP20.22■□□□□ 0.83
VPS28-205ENST00000526204 ZAR1LA6NP61 321 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 PDPK1O15530 556 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 PDE9AO76083 593 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 NFATC1O95644 943 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 POU2F1P14859 743 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 GSTM5P46439 218 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 SLC6A11P48066 632 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 UBE3AQ05086 875 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 FRMPD2BQ6IN97 320 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 DSG4Q86SJ6 1040 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 SLC44A2Q8IWA5 706 aaPredicted RBP20.22■□□□□ 0.83
VPS28-205ENST00000526204 OR5K2Q8NHB8 316 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 SLC38A5Q8WUX1 472 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 CDCA4Q9BXL8 241 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 MS4A8Q9BY19 250 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 ZNF717Q9BY31 904 aaPredicted RBP20.22■□□□□ 0.83
VPS28-205ENST00000526204 ARMC7Q9H6L4 198 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 CLN6Q9NWW5 311 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 PCDH10Q9P2E7 1040 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 TAC3Q9UHF0 121 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 DPP7Q9UHL4 492 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 TMEM98Q9Y2Y6 226 aa20.22■□□□□ 0.83
VPS28-205ENST00000526204 TAF4O00268 1085 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 SERPINB7O75635 380 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 RECKO95980 971 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 GASTP01350 101 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 POU2F2P09086 479 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 TGM1P22735 817 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 BSGP35613 385 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 TGFBR1P36897 503 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 CCR8P51685 355 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 CRISP1P54107 249 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 KLHL17Q6TDP4 642 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 PLEKHG7Q6ZR37 379 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 ADGRF3Q8IZF5 1079 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 HORMAD2Q8N7B1 307 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 ZBTB8BQ8NAP8 495 aaPredicted RBP20.21■□□□□ 0.83
VPS28-205ENST00000526204 APOBEC4Q8WW27 367 aaKnown RBP20.21■□□□□ 0.83
VPS28-205ENST00000526204 RAB7BQ96AH8 199 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 ZNF707Q96C28 371 aaPredicted RBP20.21■□□□□ 0.83
VPS28-205ENST00000526204 NT5DC2Q9H857 520 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 NMNAT1Q9HAN9 279 aaPredicted RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms