RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 TXNL1O43396 289 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 GPRIN2O60269 458 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 KINO60870 393 aaKnown RBP4.43□□□□□ -1.7
SF3B1-212ENST00000496458 PGLSO95336 258 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 MT-ND2P03891 347 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 AZU1P20160 251 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 KHKP50053 298 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 POLR2FP61218 127 aaKnown RBP4.43□□□□□ -1.7
SF3B1-212ENST00000496458 NFE2L1Q14494 772 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 MLF2Q15773 248 aaPredicted RBP4.43□□□□□ -1.7
SF3B1-212ENST00000496458 ANKDD1AQ495B1 522 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 TRAT1Q6PIZ9 186 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 TRMT11Q7Z4G4 463 aaKnown RBP4.43□□□□□ -1.7
SF3B1-212ENST00000496458 COX8CQ7Z4L0 72 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 GPR141Q7Z602 305 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 SUMF1Q8NBK3 374 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 FIBINQ8TAL6 211 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 HEXDCQ8WVB3 486 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 ATP6V0A1Q93050 837 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 TRIM44Q96DX7 344 aaPredicted RBP4.43□□□□□ -1.7
SF3B1-212ENST00000496458 CCDC28BQ9BUN5 200 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 OCR1Q9BZK8 76 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 MMADHCQ9H3L0 296 aaPredicted RBP4.43□□□□□ -1.7
SF3B1-212ENST00000496458 MID1IP1Q9NPA3 183 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 TSPAN16Q9UKR8 245 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 SATB2Q9UPW6 733 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 FYCO1Q9BQS8 1478 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 MAP3K4Q9Y6R4 1608 aa4.43□□□□□ -1.7
SF3B1-212ENST00000496458 PPRC1Q5VV67 1664 aaKnown RBP4.42□□□□□ -1.7
SF3B1-212ENST00000496458 CFAP43Q8NDM7 1665 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 FAM86B1E9PN63 330 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 FLRT2O43155 660 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 PPIP5K2O43314 1243 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 TNFSF12O43508 249 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 STX6O43752 255 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 PRPSAP2O60256 369 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 STAM2O75886 525 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 APBB3O95704 486 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 OLFM2O95897 454 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 FAM86B2P0C5J1 330 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 PDGFRAP16234 1089 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 LBPP18428 481 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 NPY4RP50391 375 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 SLC12A3P55017 1021 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 YBEYP58557 167 aaPredicted RBP4.42□□□□□ -1.7
SF3B1-212ENST00000496458 STARD6P59095 220 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 ABCE1P61221 599 aaKnown RBP4.42□□□□□ -1.7
SF3B1-212ENST00000496458 SRPXP78539 464 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 LCE3EQ5T5B0 92 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 CAVIN1Q6NZI2 390 aaKnown RBP4.42□□□□□ -1.7
SF3B1-212ENST00000496458 SPATA31D1Q6ZQQ2 1576 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 MARCH9Q86YJ5 346 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 ZNF584Q8IVC4 421 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 ZC3H3Q8IXZ2 948 aaKnown RBP4.42□□□□□ -1.7
SF3B1-212ENST00000496458 TBC1D21Q8IYX1 336 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 C16orf45Q96MC5 204 aaPredicted RBP4.42□□□□□ -1.7
SF3B1-212ENST00000496458 RUNDC3BQ96NL0 473 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 MGME1Q9BQP7 344 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 DPEP2Q9H4A9 486 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 C10orf88Q9H8K7 445 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 LIN28AQ9H9Z2 209 aaKnown RBP4.42□□□□□ -1.7
SF3B1-212ENST00000496458 COMMD8Q9NX08 183 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 LIPT1Q9Y234 373 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 NCKAP1Q9Y2A7 1128 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 KLK4Q9Y5K2 254 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 ABCA9Q8IUA7 1624 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 CCDC18Q5T9S5 1454 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 TEX14Q8IWB6 1497 aa4.42□□□□□ -1.7
SF3B1-212ENST00000496458 SPAG9O60271 1321 aaKnown RBP4.42□□□□□ -1.7
SF3B1-212ENST00000496458 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.41□□□□□ -1.7
SF3B1-212ENST00000496458 MTUS2Q5JR59 1369 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 TROQ12816 1431 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-212ENST00000496458 VPS8Q8N3P4 1428 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 PGRMC2O15173 223 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 FCGR3BO75015 233 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 PNPP00491 289 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 IGKV3-15P01624 115 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 GOT1P17174 413 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 CTNNA2P26232 953 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 PSMB4P28070 264 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 FEN1P39748 380 aaKnown RBP4.41□□□□□ -1.7
SF3B1-212ENST00000496458 IRX3P78415 501 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-212ENST00000496458 HMGN5P82970 282 aaKnown RBP4.41□□□□□ -1.7
SF3B1-212ENST00000496458 AKAP17AQ02040 695 aaKnown RBP4.41□□□□□ -1.7
SF3B1-212ENST00000496458 KLHL30Q0D2K2 578 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 CBX3Q13185 183 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 GCKRQ14397 625 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 GRB14Q14449 540 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 LASP1Q14847 261 aaKnown RBP4.41□□□□□ -1.7
SF3B1-212ENST00000496458 SIX1Q15475 284 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-212ENST00000496458 TYSND1Q2T9J0 566 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 SMU1Q2TAY7 513 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 LRRC37A5PQ49AS3 106 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 MPP7Q5T2T1 576 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 FAM46CQ5VWP2 391 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 KDELC1Q6UW63 502 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 MTERF4Q7Z6M4 381 aaKnown RBP4.41□□□□□ -1.7
SF3B1-212ENST00000496458 KCNMB4Q86W47 210 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 ST6GALNAC6Q969X2 333 aa4.41□□□□□ -1.7
SF3B1-212ENST00000496458 C11orf52Q96A22 123 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms