RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ZNF696Q9H7X3 374 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 IGKV6-21A0A0C4DH24 114 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 NPIPA2E9PIF3 369 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 NPIPA3F8WFD2 350 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 SLC18A2Q05940 514 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 SLAMF1Q13291 335 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 PMS2P3Q13401 168 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 ZDHHC1Q8WTX9 485 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF689Q96CS4 500 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-215ENST00000496447 TMEM74Q96NL1 305 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 TRIM36Q9NQ86 728 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 ZDHHC7Q9NXF8 308 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 MED11Q9P086 117 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 IFT52Q9Y366 437 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 NFS1Q9Y697 457 aa12.64□□□□□ -0.39
PTPRF-215ENST00000496447 A0A1B0GVI7 797 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 A0A1W2PPW3 197 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 GLDCP23378 1020 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 RAB28P51157 221 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 PCLAFQ15004 111 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 CYBRD1Q53TN4 286 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 NCEH1Q6PIU2 408 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 LSM14AQ8ND56 463 aaKnown RBP12.63□□□□□ -0.39
PTPRF-215ENST00000496447 FIBINQ8TAL6 211 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 AKAP1Q92667 903 aaKnown RBP eCLIP12.63□□□□□ -0.393e-7■■■□□ 19.2
PTPRF-215ENST00000496447 KCTD7Q96MP8 289 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 FKBP14Q9NWM8 211 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 GNG8Q9UK08 70 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 OR1A2Q9Y585 309 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 H7C2Y5 167 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 IL3P08700 152 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 ADRB3P13945 408 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 XRCC1P18887 633 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-215ENST00000496447 AOC1P19801 751 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 CSTF1Q05048 431 aaKnown RBP12.63□□□□□ -0.39
PTPRF-215ENST00000496447 DNASE1L3Q13609 305 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 EFR3AQ14156 821 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 TRAM2Q15035 370 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 LPAL2Q16609 132 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 CATSPEREQ5SY80 951 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 MRPL10Q7Z7H8 261 aaKnown RBP12.63□□□□□ -0.39
PTPRF-215ENST00000496447 BBS10Q8TAM1 723 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 OR5P2Q8WZ92 322 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 TUBA1CQ9BQE3 449 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 PELOQ9BRX2 385 aaKnown RBP12.63□□□□□ -0.39
PTPRF-215ENST00000496447 SLC6A15Q9H2J7 730 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF395Q9H8N7 513 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-215ENST00000496447 GIMAP2Q9UG22 337 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 GLS2Q9UI32 602 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 MEMO1Q9Y316 297 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 FUOMA2VDF0 154 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 MEIS3P2A8K0S8 358 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 F8A1P23610 371 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 GADD45AP24522 165 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 CDH15P55291 814 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 HHEXQ03014 270 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 MARCH9Q86YJ5 346 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 ZC3H3Q8IXZ2 948 aaKnown RBP12.63□□□□□ -0.39
PTPRF-215ENST00000496447 HERPUD2Q9BSE4 406 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 POLDIP3Q9BY77 421 aaKnown RBP12.63□□□□□ -0.39
PTPRF-215ENST00000496447 LMAN1LQ9HAT1 526 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 EIF3KQ9UBQ5 218 aaKnown RBP12.63□□□□□ -0.39
PTPRF-215ENST00000496447 AASSQ9UDR5 926 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 MYOCOSA0A1B0GUC4 107 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 FAM227AF5H4B4 570 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 CSN2P05814 226 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 CD1DP15813 335 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 CDH11P55287 796 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 RELAQ04206 551 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 SLC3A1Q07837 685 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 SMYD5Q6GMV2 418 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 C7orf57Q8NEG2 295 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF548Q8NEK5 533 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-215ENST00000496447 OR10Q1Q8NGQ4 319 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 ZBTB26Q9HCK0 441 aa12.63□□□□□ -0.39
PTPRF-215ENST00000496447 KLF11O14901 512 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 DIRAS1O95057 198 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 RAB36O95755 333 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 CSTAP01040 98 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 PDYNP01213 254 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 HK1P19367 917 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 PTNP21246 168 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 HSD17B12Q53GQ0 312 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 C1orf189Q5VU69 101 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 TTLL10Q6ZVT0 673 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 MFSD2AQ8NA29 543 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 OR2L8Q8NGY9 312 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 IGKV6D-21A0A0A0MT36 114 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 SOX14O95416 240 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 CRYZL1O95825 349 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 CKMT2P17540 419 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 FPR1P21462 350 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 CD83Q01151 205 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 DEFA5Q01523 94 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 GSTM4Q03013 218 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 NPTX1Q15818 432 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 FAM189A2Q15884 450 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 ODF4Q2M2E3 257 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 IGDCC3Q8IVU1 814 aa12.62□□□□□ -0.39
PTPRF-215ENST00000496447 NUP43Q8NFH3 380 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms