RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 Q6ZNX1 250 aa12.85□□□□□ -0.35
GPC1-209ENST00000495100 ADGRD2Q7Z7M1 963 aa12.85□□□□□ -0.35
GPC1-209ENST00000495100 TCEAL8Q8IYN2 117 aa12.85□□□□□ -0.35
GPC1-209ENST00000495100 CADM3Q8N126 398 aa12.85□□□□□ -0.35
GPC1-209ENST00000495100 NLGN4YQ8NFZ3 816 aaPredicted RBP12.85□□□□□ -0.35
GPC1-209ENST00000495100 OR4E2Q8NGC2 313 aa12.85□□□□□ -0.35
GPC1-209ENST00000495100 GGHQ92820 318 aa12.85□□□□□ -0.35
GPC1-209ENST00000495100 WDR12Q9GZL7 423 aaKnown RBP12.85□□□□□ -0.35
GPC1-209ENST00000495100 NDEL1Q9GZM8 345 aa12.85□□□□□ -0.35
GPC1-209ENST00000495100 ELAC1Q9H777 363 aaKnown RBP12.85□□□□□ -0.35
GPC1-209ENST00000495100 TAS2R9Q9NYW1 312 aa12.85□□□□□ -0.35
GPC1-209ENST00000495100 A0A1W2PP55 124 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 FAM25AB3EWG3 89 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 FAM25CB3EWG5 89 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 FAM25GB3EWG6 89 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 ENTPD6O75354 484 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 CDRT1O95170 752 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 HOXB3P14651 431 aaPredicted RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 GSTM5P46439 218 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 VEGFBP49765 207 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 IFITM3Q01628 133 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 IQCCQ4KMZ1 466 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 ZNF805Q5CZA5 627 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 C10orf62Q5T681 223 aaPredicted RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 OR2G6Q5TZ20 316 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 C22orf42Q6IC83 251 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 MTFR2Q6P444 385 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.84□□□□□ -0.35
GPC1-209ENST00000495100 CELF2-AS1Q8N7Q2 184 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 BBS10Q8TAM1 723 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 RAD51AP1Q96B01 352 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 PDLIM5Q96HC4 596 aaKnown RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 ZSCAN5AQ9BUG6 496 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 ADAP2Q9NPF8 381 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 FAM120CQ9NX05 1096 aaKnown RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 TEX10Q9NXF1 929 aaPredicted RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 MKLN1Q9UL63 735 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 MED12Q93074 2177 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 NPIPA5A0A0B4J1W7 369 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 FAM183AA6NL82 134 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 NPIPA7E9PJI5 369 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 TAF4O00268 1085 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 SLC22A1O15245 554 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 NDUFS4O43181 175 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 RPLP0P05388 317 aaKnown RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 NPIPA8P0DM63 369 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 ILF2Q12905 390 aaKnown RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 SGCGQ13326 291 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 CTF1Q16619 201 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 CRTC2Q53ET0 693 aaPredicted RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 ERICH5Q6P6B1 374 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 AMER3Q8N944 861 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 OR9A1PQ8NGU1 263 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 GATAD2BQ8WXI9 593 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 MUL1Q969V5 352 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 TRIT1Q9H3H1 467 aaKnown RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 NMNAT1Q9HAN9 279 aaPredicted RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 SIAEQ9HAT2 523 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 BEX1Q9HBH7 125 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 PRRT4C9JH25 899 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 CDC123O75794 336 aaPredicted RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 ADH5P11766 374 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 RPS3P23396 243 aaKnown RBP eCLIP12.84□□□□□ -0.35
GPC1-209ENST00000495100 CST5P28325 142 aaPredicted RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 PPP2R1BP30154 601 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 GJA8P48165 433 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 CCT3P49368 545 aaKnown RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 XKP51811 444 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 UGT2B15P54855 530 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 TAS2R41P59536 307 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 PDZK1Q5T2W1 519 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 ZNF57Q68EA5 555 aaPredicted RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 USP51Q70EK9 711 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 CCDC71Q8IV32 467 aaPredicted RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 KRT78Q8N1N4 520 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 HORMAD2Q8N7B1 307 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 SMAP2Q8WU79 429 aaPredicted RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 TRUB1Q8WWH5 349 aaKnown RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 OR8D1Q8WZ84 308 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 TRNT1Q96Q11 434 aaKnown RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 LGR4Q9BXB1 951 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 OR51V1Q9H2C8 321 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 H2AFY2Q9P0M6 372 aaPredicted RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 ZNF282Q9UDV7 671 aaPredicted RBP12.84□□□□□ -0.35
GPC1-209ENST00000495100 ANKRD36A6QL64 1941 aa12.84□□□□□ -0.35
GPC1-209ENST00000495100 DOCK4Q8N1I0 1966 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 IFNA14P01570 189 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 C1GALT1C1LP0DN25 315 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 DEFA1P59665 94 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 DEFA3P59666 94 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 WDR5P61964 334 aaKnown RBP12.83□□□□□ -0.36
GPC1-209ENST00000495100 CD83Q01151 205 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 GBX1Q14549 363 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 GPR68Q15743 365 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 DESI1Q6ICB0 168 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 LAIR2Q6ISS4 152 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 POMZP3Q6PJE2 187 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 SLC16A12Q6ZSM3 486 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 C6orf120Q7Z4R8 191 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 VN1R2Q8NFZ6 395 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms