RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 SLAMF1Q13291 335 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 TUBA3CQ13748 450 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 EIF2S3LQ2VIR3 472 aaKnown RBP16.94■□□□□ 0.3
COL9A3-214ENST00000490398 LETMD1Q6P1Q0 360 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 TUBA3EQ6PEY2 450 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 OR4N5Q8IXE1 308 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 APCDD1LQ8NCL9 501 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 OR2W6PQ8NHA6 318 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 GRHL3Q8TE85 626 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 RGMAQ96B86 450 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 ANKRD9Q96BM1 317 aaPredicted RBP16.94■□□□□ 0.3
COL9A3-214ENST00000490398 SIGLEC12Q96PQ1 595 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 TMEM237Q96Q45 408 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 C1QTNF3Q9BXJ4 246 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.94■□□□□ 0.3
COL9A3-214ENST00000490398 C12orf65Q9H3J6 166 aaKnown RBP16.94■□□□□ 0.3
COL9A3-214ENST00000490398 FARSBQ9NSD9 589 aaKnown RBP16.94■□□□□ 0.3
COL9A3-214ENST00000490398 ATG4BQ9Y4P1 393 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 CPAMD8Q8IZJ3 1885 aa16.94■□□□□ 0.3
COL9A3-214ENST00000490398 TMPRSS11DO60235 418 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 ZNF500O60304 480 aaPredicted RBP16.93■□□□□ 0.3
COL9A3-214ENST00000490398 WISP2O76076 250 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 CBX6O95503 412 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 GBAP04062 536 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 HSD17B3P37058 310 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 CD96P40200 585 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 GPR143P51810 404 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 AP2B1P63010 937 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 SGO1Q5FBB7 561 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 TCHHL1Q5QJ38 904 aaPredicted RBP16.93■□□□□ 0.3
COL9A3-214ENST00000490398 C18orf63Q68DL7 685 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 C16orf47Q6ZP98 133 aaPredicted RBP16.93■□□□□ 0.3
COL9A3-214ENST00000490398 MILR1Q7Z6M3 343 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 ZNF321PQ8N8H1 164 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 SRFBP1Q8NEF9 429 aaKnown RBP16.93■□□□□ 0.3
COL9A3-214ENST00000490398 ARMC2Q8NEN0 867 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 ADAMTS18Q8TE60 1221 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 TRPC4APQ8TEL6 797 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 ZNF354BQ96LW1 612 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 ROGDIQ9GZN7 287 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 RNF32Q9H0A6 362 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 ADGRE2Q9UHX3 823 aa16.93■□□□□ 0.3
COL9A3-214ENST00000490398 RP1L1Q8IWN7 2480 aaPredicted RBP16.92■□□□□ 0.3
COL9A3-214ENST00000490398 TRAV17A0A0B4J275 112 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 CLDN4O14493 209 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 FGF17O60258 216 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 RNF224P0DH78 156 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 CPN2P22792 545 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 PTX3P26022 381 aaPredicted RBP16.92■□□□□ 0.3
COL9A3-214ENST00000490398 TPP2P29144 1249 aaPredicted RBP16.92■□□□□ 0.3
COL9A3-214ENST00000490398 RAP1GDS1P52306 607 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 PMP22Q01453 160 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 MEP1AQ16819 746 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 ZNF678Q5SXM1 525 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 FRG2Q64ET8 278 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 SPINK14Q6IE38 97 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 MRM1Q6IN84 353 aaKnown RBP16.92■□□□□ 0.3
COL9A3-214ENST00000490398 DGAT2L6Q6ZPD8 337 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 RPS19BP1Q86WX3 136 aaKnown RBP16.92■□□□□ 0.3
COL9A3-214ENST00000490398 B3GNT7Q8NFL0 401 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 ACMSDQ8TDX5 336 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 DOK4Q8TEW6 326 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 THAP3Q8WTV1 239 aaPredicted RBP16.92■□□□□ 0.3
COL9A3-214ENST00000490398 PTPMT1Q8WUK0 201 aaPredicted RBP16.92■□□□□ 0.3
COL9A3-214ENST00000490398 FRG2BQ96QU4 278 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 ALOXE3Q9BYJ1 711 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 LIN28AQ9H9Z2 209 aaKnown RBP16.92■□□□□ 0.3
COL9A3-214ENST00000490398 MRPS33Q9Y291 106 aaKnown RBP16.92■□□□□ 0.3
COL9A3-214ENST00000490398 ASB4Q9Y574 426 aa16.92■□□□□ 0.3
COL9A3-214ENST00000490398 A0A0A6YYD5 115 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 TRBV11-1A0A0K0K1C0 115 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 ARHGAP10A1A4S6 786 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 GABRR3A8MPY1 467 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 G3V2L1 256 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 FOXE1O00358 373 aaPredicted RBP16.91■□□□□ 0.3
COL9A3-214ENST00000490398 PRAMEF2O60811 474 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 SEMA7AO75326 666 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 OR4F21O95013 312 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 ATP5F1P24539 256 aaPredicted RBP16.91■□□□□ 0.3
COL9A3-214ENST00000490398 HERVK_113P63132 956 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 CLCQ05315 142 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 CUL3Q13618 768 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 UBAP2LQ14157 1087 aaKnown RBP16.91■□□□□ 0.3
COL9A3-214ENST00000490398 RPUSD3Q6P087 351 aaKnown RBP16.91■□□□□ 0.3
COL9A3-214ENST00000490398 ZNF227Q86WZ6 799 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 TDRPQ86YL5 185 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 ZCCHC7Q8N3Z6 543 aaKnown RBP16.91■□□□□ 0.3
COL9A3-214ENST00000490398 SLC5A8Q8N695 610 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 MDS2Q8NDY4 140 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 NCLNQ969V3 563 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 REPS1Q96D71 796 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 HBEGFQ99075 208 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 CCDC77Q9BR77 488 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 ERVK-6Q9BXR3 956 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 TEKT2Q9UIF3 430 aa16.91■□□□□ 0.3
COL9A3-214ENST00000490398 PPIEQ9UNP9 301 aaKnown RBP16.91■□□□□ 0.3
COL9A3-214ENST00000490398 A0A1W2PR48 441 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 A0A1W2PS29 197 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 GLOD5A6NK44 160 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 TMEM200CA6NKL6 621 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms