RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	MENT	Q9BUN1	341 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	ERVK-6	Q9BXR3	956 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	TMPRSS13	Q9BYE2	586 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	NOL11	Q9H8H0	719 aa	Known RBP	8.27	□□□□□ -1.09
USP4-213	ENST00000488520	ACTR8	Q9H981	624 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	PELI2	Q9HAT8	420 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	MED4	Q9NPJ6	270 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	OXSM	Q9NWU1	459 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	COPG2	Q9UBF2	871 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	ITGB1BP2	Q9UKP3	347 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	PLCL2	Q9UPR0	1127 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	KLHL20	Q9Y2M5	609 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	EML6	Q6ZMW3	1958 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520		A0A0J9YVX5	310 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520		A0A1W2PPV9	198 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	TMEM120B	A0PK00	339 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	URAD	A6NGE7	173 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520		G3V2L1	256 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520		H3BQF6	201 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	BIRC5	O15392	142 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	TYROBP	O43914	113 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	KLHL41	O60662	606 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	SIX3	O95343	332 aa	Predicted RBP	8.26	□□□□□ -1.09
USP4-213	ENST00000488520	OTC	P00480	354 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	IGHE	P01854	428 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	UMOD	P07911	640 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	MTHFD2	P13995	350 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	EZR	P15311	586 aa	Known RBP	8.26	□□□□□ -1.09
USP4-213	ENST00000488520	CREB1	P16220	341 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	MAPK1	P28482	360 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	PEBP1	P30086	187 aa	Known RBP	8.26	□□□□□ -1.09
USP4-213	ENST00000488520	HNF4A	P41235	474 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	AGTR2	P50052	363 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	NAGLU	P54802	743 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	RPS15A	P62244	130 aa	Known RBP	8.26	□□□□□ -1.09
USP4-213	ENST00000488520	DCD	P81605	110 aa	Known RBP	8.26	□□□□□ -1.09
USP4-213	ENST00000488520	CLC	Q05315	142 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	AIMP2	Q13155	320 aa	Known RBP	8.26	□□□□□ -1.09
USP4-213	ENST00000488520	CHIT1	Q13231	466 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	ZXDC	Q2QGD7	858 aa	Predicted RBP	8.26	□□□□□ -1.09
USP4-213	ENST00000488520	FAM214A	Q32MH5	1076 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	TNFAIP8L3	Q5GJ75	292 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	ZNF678	Q5SXM1	525 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	LIPJ	Q5W064	366 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	ATG9B	Q674R7	924 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	ATG16L1	Q676U5	607 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	GOLGA7	Q7Z5G4	137 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	TMPRSS11B	Q86T26	416 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	C10orf107	Q8IVU9	208 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	KLHDC8A	Q8IYD2	350 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	TTC29	Q8NA56	475 aa	Predicted RBP	8.26	□□□□□ -1.09
USP4-213	ENST00000488520	TRPV3	Q8NET8	790 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	TTL	Q8NG68	377 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	MGARP	Q8TDB4	240 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	TRPC4AP	Q8TEL6	797 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	UBTD2	Q8WUN7	234 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	FAR1	Q8WVX9	515 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	NEIL2	Q969S2	332 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	TLCD1	Q96CP7	247 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	PTCD3	Q96EY7	689 aa	Known RBP	8.26	□□□□□ -1.09
USP4-213	ENST00000488520	SH3GL2	Q99962	352 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	ZFYVE21	Q9BQ24	234 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	C17orf62	Q9BQA9	187 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	EFCAB11	Q9BUY7	163 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	PITPNM3	Q9BZ71	974 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	PITHD1	Q9GZP4	211 aa	Predicted RBP	8.26	□□□□□ -1.09
USP4-213	ENST00000488520	SLC6A20	Q9NP91	592 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	SEMA4B	Q9NPR2	832 aa	Predicted RBP	8.26	□□□□□ -1.09
USP4-213	ENST00000488520	PFDN4	Q9NQP4	134 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	TXLNG	Q9NUQ3	528 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	SLC17A7	Q9P2U7	560 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	ADGRE2	Q9UHX3	823 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	FBXL4	Q9UKA2	621 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	HIF3A	Q9Y2N7	669 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	INTS1	Q8N201	2190 aa	Known RBP	8.26	□□□□□ -1.09
USP4-213	ENST00000488520	ZFHX3	Q15911	3703 aa		8.26	□□□□□ -1.09
USP4-213	ENST00000488520	NAV3	Q8IVL0	2385 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520		H3BMH7	237 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	JRK	O75564	520 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	SNUPN	O95149	360 aa	Known RBP	8.25	□□□□□ -1.09
USP4-213	ENST00000488520	CHEK2	O96017	543 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	IGLV1-40	P01703	118 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	BPGM	P07738	259 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	MSL3P1	P0C860	447 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	PCNA	P12004	261 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	HMOX2	P30519	316 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	ALDH3A1	P30838	453 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	SERPINB5	P36952	375 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	SLC18A1	P54219	525 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	ARSF	P54793	590 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	CDH13	P55290	713 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	SOX8	P57073	446 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	KCNK10	P57789	538 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	VSX2	P58304	361 aa	Predicted RBP	8.25	□□□□□ -1.09
USP4-213	ENST00000488520	PPP2R2A	P63151	447 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	RELA	Q04206	551 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	RGS1	Q08116	209 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	IFT88	Q13099	833 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	DOC2A	Q14183	400 aa		8.25	□□□□□ -1.09
USP4-213	ENST00000488520	ZNF169	Q14929	603 aa	Predicted RBP	8.25	□□□□□ -1.09

Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms