RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 MCM3P25205 808 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 ITGA3P26006 1051 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 PSMB5P28074 263 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 ECHS1P30084 290 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 CMPK1P30085 196 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 BDKRB1P46663 353 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 OR1D4P47884 311 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 KCNJ1P48048 391 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 CARSP49589 748 aaKnown RBP6.89□□□□□ -1.31
USP54-208ENST00000461520 FOXL2P58012 376 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 VSX2P58304 361 aaPredicted RBP6.89□□□□□ -1.31
USP54-208ENST00000461520 SRSF2Q01130 221 aaKnown RBP6.89□□□□□ -1.31
USP54-208ENST00000461520 ARHGAP19Q14CB8 494 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 EIF2S3LQ2VIR3 472 aaKnown RBP6.89□□□□□ -1.31
USP54-208ENST00000461520 TUBB8Q3ZCM7 444 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 CCSMST1Q4G0I0 132 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 ANKRD20A4Q4UJ75 823 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 WASHC2DQ5SRD0 308 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 AGAP7PQ5VUJ5 663 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 IRAK1BP1Q5VVH5 260 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 FRMPD2BQ6IN97 320 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 PRMT9Q6P2P2 845 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 KIRREL2Q6UWL6 708 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 IGFL2Q6UWQ7 119 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 COX15Q7KZN9 410 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 RNF44Q7L0R7 432 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 PQLC1Q8N2U9 271 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 OR9A1PQ8NGU1 263 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 PPP4R1Q8TF05 950 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 C19orf60Q96EN9 201 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 AGAP4Q96P64 663 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 BARD1Q99728 777 aaKnown RBP6.89□□□□□ -1.31
USP54-208ENST00000461520 WDR77Q9BQA1 342 aaPredicted RBP6.89□□□□□ -1.31
USP54-208ENST00000461520 LHPPQ9H008 270 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 LDAHQ9H6V9 325 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 ZNF304Q9HCX3 659 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 LZTFL1Q9NQ48 299 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 ASF1BQ9NVP2 202 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 INTS10Q9NVR2 710 aaKnown RBP6.89□□□□□ -1.31
USP54-208ENST00000461520 FBXL4Q9UKA2 621 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 RUVBL2Q9Y230 463 aaKnown RBP6.89□□□□□ -1.31
USP54-208ENST00000461520 HS3ST3B1Q9Y662 390 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 COPG1Q9Y678 874 aaKnown RBP6.89□□□□□ -1.31
USP54-208ENST00000461520 DOPEY1Q5JWR5 2465 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 ABCA12Q86UK0 2595 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 CSMD1Q96PZ7 3565 aa6.89□□□□□ -1.31
USP54-208ENST00000461520 IGLV3-12A0A075B6K2 115 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 LOC105369274A0A096LPK9 316 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 LOC102723532A0A0G2JNH3 316 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 A0A0J9YVX5 310 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 TCRBV7S3A2A0A539 114 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 MAGEB16A2A368 324 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 OR2A25A4D2G3 310 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 GOLGA8KD6RF30 607 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 E5RI56 91 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 GOLGA8TH3BQL2 631 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 MYO1CO00159 1063 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 MASP2O00187 686 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 PRPF4O43172 522 aaKnown RBP eCLIP6.88□□□□□ -1.31
USP54-208ENST00000461520 CEP104O60308 925 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 NIPSNAP2O75323 286 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 VPS26AO75436 327 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 PSIP1O75475 530 aaKnown RBP6.88□□□□□ -1.31
USP54-208ENST00000461520 CBX6O95503 412 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 CATP04040 527 aaKnown RBP6.88□□□□□ -1.31
USP54-208ENST00000461520 ERVK-10P10266 1014 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 MLNP12872 115 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 PKMP14618 531 aaKnown RBP6.88□□□□□ -1.31
USP54-208ENST00000461520 HSD17B2P37059 387 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 MAGEA6P43360 314 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 PER3P56645 1201 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 OCA2Q04671 838 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 FASTKQ14296 549 aaKnown RBP6.88□□□□□ -1.31
USP54-208ENST00000461520 KCNJ11Q14654 390 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 RBBP7Q16576 425 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 KLHL38Q2WGJ6 581 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 TTLL9Q3SXZ7 439 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 NEPROQ6NW34 567 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 FBXO42Q6P3S6 717 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 CES3Q6UWW8 571 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 SHISA6Q6ZSJ9 500 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 NEK10Q6ZWH5 1172 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 CENPUQ71F23 418 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 CUZD1Q86UP6 607 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 OR4N4Q8N0Y3 316 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 PRELID2Q8N945 189 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 STT3BQ8TCJ2 826 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.88□□□□□ -1.31
USP54-208ENST00000461520 SMPDL3AQ92484 453 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 INPP5DQ92835 1189 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 MVB12AQ96EY5 273 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 DPH7Q9BTV6 452 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 CRB3Q9BUF7 120 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 EPS8L2Q9H6S3 715 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 SYNPO2LQ9H987 977 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 ZBTB20Q9HC78 741 aaPredicted RBP6.88□□□□□ -1.31
USP54-208ENST00000461520 MRPS30Q9NP92 439 aaKnown RBP6.88□□□□□ -1.31
USP54-208ENST00000461520 FAM114A2Q9NRY5 505 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 AGPAT4Q9NRZ5 378 aa6.88□□□□□ -1.31
USP54-208ENST00000461520 UTP6Q9NYH9 597 aaKnown RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms